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IGVFFI5781OGFX

released
validated
File Set
IGVFDS3278AFYF(lentiMPRA integrating a reporter library targeting candidate cis-regulatory elements genome-wide)
Summary
GRCh38 reporter experiment
Analysis Step Version
/analysis-step-versions/c3ad4525-87d0-4d22-9410-f3e616d7cb9c/
File Format
tsv
Content Type
reporter experiment
md5sum
44af499617af771fb388c343ee4b5ebc
Content MD5sum
6f0dcc789aa795ef93d4704e0d2c4bf8
File Size
20 MB
Submitted File Name
"/data/cephfs-2/unmirrored/groups/kircher/IGVF_data_submssion_TM/proximalPromotor/mprasnakeflow/results/experiment/HepG2/reporter_experiment.oligo.HepG2.defaultAssignment.default.all.tsv.gz"
Checkfiles Version
Legacy version of checkfiles
Submitter Comment
MPRAsnakeflow v0.3.0
Attribution
Nadav Ahituv, UCSF

Reference Source Details

Genome Assembly
GRCh38

File Format Specifications

1 item
Page
Description
Type
Download
Standardized File Format
Preview
IGVF MPRA reporter experiment format
file format specification

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens (male) HepG2 pooled cell specimen transduced (lentivirus) with a reporter library

Files This File Derives From

55 items
fastq
reads
Nadav Ahituv, UCSF
2.1 GB
validated
fastq
reads
Nadav Ahituv, UCSF
998 MB
validated
fastq
reads
Nadav Ahituv, UCSF
2.0 GB
validated
fastq
reads
Nadav Ahituv, UCSF
1.0 GB
validated
fastq
reads
Nadav Ahituv, UCSF
1.4 GB
validated
fastq
reads
Nadav Ahituv, UCSF
826 MB
validated
fastq
reads
Nadav Ahituv, UCSF
804 MB
validated
fastq
reads
Nadav Ahituv, UCSF
523 MB
validated
fastq
reads
Nadav Ahituv, UCSF
2.1 GB
validated
fastq
reads
Nadav Ahituv, UCSF
2.1 GB
validated