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IGVFFI5731CAQI

released
validated
File Set
IGVFDS7496XAWN(single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq))
Summary
GRCm39 unfiltered fragments
Analysis Step Version
/analysis-step-versions/39c0498d-91f6-42de-8896-2fab1403f032/
File Format
bed
Content Type
fragments
Aliases
buenrostro-bernstein:IGVFDS7496XAWN_fragments
md5sum
d1542128310f55775c91c9eeb344a9d6
Content MD5sum
fc84bc300e45fbd269fcc02715f295dc
File Size
1.6 GB
Submitted File Name
gs://fc-9649faf8-a4ec-4ca4-a975-498a1707d03c/submissions/1d455597-b132-452b-8b75-bf2db8c76d2e/single_cell_pipeline/f4439f68-837a-444b-9590-bb9736d53f91/call-atac/wf_atac/6ad7d11f-0fd6-4a65-bf7a-f7fa339d9e5c/call-generate_fragments/SS-PKR-432.fragments.tsv.gz
Checkfiles Version
v20
Attribution
Jason Buenrostro, Broad

Reference Source Details

Genome Assembly
GRCm39

File Format Specifications

1 item
Page
Description
Type
Download
Standardized File Format
Preview
Specification of fragment file generated by https://github.com/IGVF/single-cell-pipeline
file format specification

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 brain tissue (cellular sub pool: SS-PKR 432)

Files This File Derives From

15 items
yaml
seqspec
Jason Buenrostro, Broad
1.3 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.3 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.3 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.3 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.3 KB
validated
fastq
reads
Jason Buenrostro, Broad
13 GB
validated
fastq
reads
Jason Buenrostro, Broad
7.4 GB
validated
fastq
reads
Jason Buenrostro, Broad
7.3 GB
validated
fastq
reads
Jason Buenrostro, Broad
11 GB
validated
fastq
reads
Jason Buenrostro, Broad
11 GB
validated

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tbi
index
index of IGVFFI5731CAQI
Jason Buenrostro, Broad
920 KB
validated