IGVFFI5546FCEY

released
validation exempted
File Set
IGVFDS9170BNTS(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)
Summary
GRCh38 peaks
Analysis Step Version
File Format
bed
Content Type
peaks
Aliases
ansuman-satpathy:igvf3_peaks_10x4
md5sum
5eaf2ca758f3083aa57821515e0ef91f
Content MD5sum
c62c6c4a14a4433998521edc14646a15
File Size
1.9 MB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf3/e3l4_peaks.bed
Checkfiles Version
Validation Error Detail
{"md5sum": "original md5sum c62c6c4a14a4433998521edc14646a15 does not match newly calculated md5sum 5eaf2ca758f3083aa57821515e0ef91f.", "validate_files": "Error [file=/home/ubuntu/igvf-files/2025/01/28/70bfcbcc-b74a-4cd8-9635-c771b49879c8/IGVFFI5546FCEY.bed.gz, line=229196]: chrom KI270728.1 not found [KI270728.1\t232279\t233176]\nAborting ... found error."}

Reference Source Details

Genome Assembly
GRCh38

File Format Specifications

Samples

4 items
Sample Terms
Disease Terms
Summary
Multiplexed Samples
multiplexed sample: H9 differentiated cell specimen induced to cardiac muscle cell for 15 days, female, Homo sapiens; HepG2 cell line, male, Homo sapiens grown in DMEM without serum; ... and 10 more samples
Multiplexed Samples
multiplexed sample: H9 differentiated cell specimen induced to cardiac muscle cell for 15 days, female, Homo sapiens; HepG2 cell line, male, Homo sapiens grown in DMEM without serum; ... and 10 more samples
Multiplexed Samples
multiplexed sample: H9 differentiated cell specimen induced to cardiac muscle cell for 15 days, female, Homo sapiens; HepG2 cell line, male, Homo sapiens grown in DMEM without serum; ... and 10 more samples
Multiplexed Samples
multiplexed sample: H9 differentiated cell specimen induced to cardiac muscle cell for 15 days, female, Homo sapiens; HepG2 cell line, male, Homo sapiens grown in DMEM without serum; ... and 10 more samples

Files This File Derives From

1 item
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
tsv
fragments
Ansuman Satpathy, Stanford
2.6 GB
validation exempted

Attribution