IGVFFI5507FART

released
validation exempted
File Set
IGVFDS8136ENRY(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)
Summary
fragments
Analysis Step Version
File Format
tsv
Content Type
fragments
Aliases
ansuman-satpathy:igvf11_fragments_10x2
md5sum
90abdadfe123cb46376069def8b8f049
Content MD5sum
a6d4025e54f8919f3de54816384aca18
File Size
7.2 GB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf11/e11l2_fragments.tsv.gz
Checkfiles Version
Validation Error Detail
{"tabular_file_error": {"schema": null, "error_number_limit": 1000, "number_of_errors": 1000, "extra-cell": {"count": 1000, "description": "This row has more values compared to the header row (the first row in the data source). A key concept is that all the rows in tabular data must have the same number of columns.", "details": [{"row_number": 52, "field_number": 2, "note": ""}, {"row_number": 52, "field_number": 3, "note": ""}]}, "error_types": ["extra-cell"]}}

File Format Specifications

Samples

4 items
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: H7-hESC differentiated cell specimen, female, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 6 days, male, Homo sapiens; ... and 10 more samples
MultiplexedSample
multiplexed sample: H7-hESC differentiated cell specimen, female, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 6 days, male, Homo sapiens; ... and 10 more samples
MultiplexedSample
multiplexed sample: H7-hESC differentiated cell specimen, female, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 6 days, male, Homo sapiens; ... and 10 more samples
MultiplexedSample
multiplexed sample: H7-hESC differentiated cell specimen, female, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 6 days, male, Homo sapiens; ... and 10 more samples

Files This File Derives From

16 items
fastq
reads
Ansuman Satpathy, Stanford
7.5 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
5.6 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
10 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
10 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
1.7 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
10 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
7.3 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
7.4 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
1.7 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
5.5 GB
validated

Files Derived From This File

2 items
tbi
index
index of IGVFFI5507FART
Ansuman Satpathy, Stanford
2.0 MB
validated
bed
peaks
GRCh38 peaks
Ansuman Satpathy, Stanford
1.6 MB
validation exempted

Attribution