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IGVFFI5495WANO

released
validation exempted
File Set
IGVFDS4026VJME(single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
GRCh38 peaks
Analysis Step Version
/analysis-step-versions/699d6738-4033-4afc-b6f3-1d82a80e0b41/
File Format
bed
Content Type
peaks
Aliases
ansuman-satpathy:igvf17_peaks_10x2
md5sum
85bc051604f6484a1711d0867ccec619
Content MD5sum
ae324db5fe305e9684c2cb8944c834d8
File Size
3.2 MB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf17/e17l2_peaks.bed
Checkfiles Version
v14
Validation Error Detail
{"md5sum": "original md5sum ae324db5fe305e9684c2cb8944c834d8 does not match newly calculated md5sum 85bc051604f6484a1711d0867ccec619.", "validate_files": "Error [file=/home/ubuntu/igvf-files/2025/01/28/d8cbf6de-43a1-4d36-ba49-dbed4a2972d9/IGVFFI5495WANO.bed.gz, line=393755]: chrom KI270727.1 not found [KI270727.1\t52073\t52953]\nAborting ... found error."}
Attribution
Ansuman Satpathy, Stanford

Reference Source Details

Genome Assembly
GRCh38

File Format Specifications

1 item
Page
Description
Type
Download
Standardized File Format
Preview
10X Genomics Peaks Bedfile
file format specification

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female) RUES2 differentiated cell specimen induced to gastrula for 2 days; Homo sapiens (female) RUES2 differentiated cell specimen induced to gastrula for 1 day; ... and 10 more samples

Files This File Derives From

1 item
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
tsv
fragments
Ansuman Satpathy, Stanford
5.8 GB
validation exempted