IGVFFI5495WANO

released

validation exempted

File Set

IGVFDS0398ALPE(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)

Summary

GRCh38 peaks

Analysis Step Version

/analysis-step-versions/699d6738-4033-4afc-b6f3-1d82a80e0b41/

File Format

bed

Content Type

peaks

Aliases

ansuman-satpathy:igvf17_peaks_10x2

md5sum

85bc051604f6484a1711d0867ccec619

Content MD5sum

ae324db5fe305e9684c2cb8944c834d8

File Size

3.2 MB

Submitted File Name

/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf17/e17l2_peaks.bed

Checkfiles Version

v14

Validation Error Detail

{"md5sum": "original md5sum ae324db5fe305e9684c2cb8944c834d8 does not match newly calculated md5sum 85bc051604f6484a1711d0867ccec619.", "validate_files": "Error [file=/home/ubuntu/igvf-files/2025/01/28/d8cbf6de-43a1-4d36-ba49-dbed4a2972d9/IGVFFI5495WANO.bed.gz, line=393755]: chrom KI270727.1 not found [KI270727.1\t52073\t52953]\nAborting ... found error."}

Reference Source Details

Genome Assembly

GRCh38

File Format Specifications

1 item

Page

Description

Type

Download

Preview

10X Genomics Peaks Bedfile

file format specification

header_peak_set_scATAC_mEB_d21_mm39_20241120.tsv

Samples

5 items

Sample Terms

Disease Terms

Summary

IGVFSM0198VBOA

MultiplexedSample

RUES2

multiplexed sample: RUES2 differentiated cell specimen induced to gastrula for 2 days, female, Homo sapiens; RUES2 differentiated cell specimen induced to gastrula for 1 day, female, Homo sapiens; ... and 10 more samples

MultiplexedSample

MultiplexedSample

MultiplexedSample

MultiplexedSample