IGVFFI5385WLKP

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/tabular-files/IGVFFI5385WLKP/",
4    "@type": [
5        "TabularFile",
6        "File",
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8    ],
9    "accession": "IGVFFI5385WLKP",
10    "aliases": [
11        "ansuman-satpathy:igvf9_multiseq_count_matrix_10x2"
12    ],
13    "analysis_step_version": "/analysis-step-versions/49020a48-9224-4d9c-8d55-2264aaf17a1f/",
14    "assay_titles": [
15        "10x multiome with MULTI-seq"
16    ],
17    "audit": {},
18    "award": {
19        "@id": "/awards/HG011972/",
20        "component": "functional characterization"
21    },
22    "barcode_map_for": [],
23    "checkfiles_version": "v16",
24    "content_md5sum": "75ff60c7e97cfcb208a3b9c1ccec10fe",
25    "content_type": "cell hashing barcodes",
26    "controlled_access": false,
27    "creation_timestamp": "2025-02-19T23:32:03.865284+00:00",
28    "derived_from": [
29        "/sequence-files/IGVFFI9084LMNS/",
30        "/sequence-files/IGVFFI5210WSAO/",
31        "/sequence-files/IGVFFI2539LKSK/",
32        "/sequence-files/IGVFFI4990FLLB/",
33        "/sequence-files/IGVFFI8666ENEF/",
34        "/sequence-files/IGVFFI8268RJMJ/",
35        "/sequence-files/IGVFFI5623NAWQ/",
36        "/sequence-files/IGVFFI2295NKXK/",
37        "/sequence-files/IGVFFI9972WCVC/",
38        "/sequence-files/IGVFFI5429FBRE/",
39        "/sequence-files/IGVFFI0168UXWB/",
40        "/sequence-files/IGVFFI7210ATDK/"
41    ],
42    "file_format": "tsv",
43    "file_format_specifications": [
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46    "file_set": {
47        "@id": "/analysis-sets/IGVFDS6435ALNY/",
48        "accession": "IGVFDS6435ALNY",
49        "file_set_type": "intermediate analysis",
50        "samples": [
51            {
52                "@id": "/multiplexed-samples/IGVFSM2512OHNK/",
53                "accession": "IGVFSM2512OHNK",
54                "classifications": [
55                    "differentiated cell specimen",
56                    "multiplexed sample"
57                ],
58                "disease_terms": [],
59                "modifications": [],
60                "sample_terms": [
61                    {
62                        "@id": "/sample-terms/CL_0000236/",
63                        "status": "released",
64                        "term_name": "B cell"
65                    }
66                ],
67                "status": "released",
68                "summary": "multiplexed sample: Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 1 day; Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 5 days; ... and 5 more samples",
69                "taxa": "Homo sapiens",
70                "treatments": []
71            }
72        ],
73        "status": "released",
74        "summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
75    },
76    "file_size": 817022,
77    "gene_list_for": [],
78    "href": "/tabular-files/IGVFFI5385WLKP/@@download/IGVFFI5385WLKP.tsv.gz",
79    "input_file_for": [],
80    "integrated_in": [],
81    "lab": {
82        "@id": "/labs/ansuman-satpathy/",
83        "title": "Ansuman Satpathy, Stanford"
84    },
85    "loci_list_for": [],
86    "md5sum": "9a9f346a143b5c43007535b6a04f2633",
87    "quality_metrics": [],
88    "release_timestamp": "2025-03-22T00:42:52.517471+00:00",
89    "s3_uri": "s3://igvf-files/2025/02/19/be87ae8c-fc48-46c6-a667-10a79f197227/IGVFFI5385WLKP.tsv.gz",
90    "schema_version": "15",
91    "status": "released",
92    "submitted_by": {
93        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
94        "title": "Christopher Mcginnis"
95    },
96    "submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/multi_tsvs/e9l2_tag_mtx.tsv.gz",
97    "summary": "cell hashing barcodes",
98    "upload_status": "validated",
99    "uuid": "be87ae8c-fc48-46c6-a667-10a79f197227",
100    "workflow": {
101        "@id": "/workflows/IGVFWF1453HVEC/",
102        "name": "Satpathy Cell Ranger",
103        "uniform_pipeline": false
104    }
105}