IGVFFI5180HSIX

released

validation exempted

File Set

IGVFDS6435ALNY(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)

Summary

GRCh38 peaks

Analysis Step Version

/analysis-step-versions/699d6738-4033-4afc-b6f3-1d82a80e0b41/

File Format

bed

Content Type

peaks

Aliases

ansuman-satpathy:igvf9_peaks_10x2

md5sum

5412f5fe0db774d833a05404accf13be

Content MD5sum

0940b61663ef5c797a132f1bc458a96d

File Size

1.7 MB

Submitted File Name

/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf9/e9l2_peaks.bed

Checkfiles Version

v14

Validation Error Detail

{"md5sum": "original md5sum 0940b61663ef5c797a132f1bc458a96d does not match newly calculated md5sum 5412f5fe0db774d833a05404accf13be.", "validate_files": "Error [file=/home/ubuntu/igvf-restricted-files/2025/01/28/90f7efe5-1432-497f-afdd-cde6f09180ca/IGVFFI5180HSIX.bed.gz, line=206547]: chrom KI270728.1 not found [KI270728.1\t232273\t233175]\nAborting ... found error."}

Reference Source Details

Genome Assembly

GRCh38

File Format Specifications

1 item

Page

Description

Type

Download

Preview

10X Genomics Peaks Bedfile

file format specification

header_peak_set_scATAC_mEB_d21_mm39_20241120.tsv

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2512OHNK

MultiplexedSample

B cell

multiplexed sample: Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 1 day; Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 5 days; ... and 5 more samples