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IGVFFI5180HSIX

released
validation exempted
File Set
IGVFDS6435ALNY(single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq): cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)
Summary
GRCh38 peaks
Analysis Step Version
/analysis-step-versions/699d6738-4033-4afc-b6f3-1d82a80e0b41/
File Format
bed
Content Type
peaks
Aliases
ansuman-satpathy:igvf9_peaks_10x2
md5sum
5412f5fe0db774d833a05404accf13be
Content MD5sum
0940b61663ef5c797a132f1bc458a96d
File Size
1.7 MB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf9/e9l2_peaks.bed
Checkfiles Version
v14
Validation Error Detail
{"md5sum": "original md5sum 0940b61663ef5c797a132f1bc458a96d does not match newly calculated md5sum 5412f5fe0db774d833a05404accf13be.", "validate_files": "Error [file=/home/ubuntu/igvf-restricted-files/2025/01/28/90f7efe5-1432-497f-afdd-cde6f09180ca/IGVFFI5180HSIX.bed.gz, line=206547]: chrom KI270728.1 not found [KI270728.1\t232273\t233175]\nAborting ... found error."}
Attribution
Ansuman Satpathy, Stanford

Reference Source Details

Genome Assembly
GRCh38

File Format Specifications

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 1 day; Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 5 days; ... and 5 more samples

Files This File Derives From

1 item
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
tsv
fragments
Ansuman Satpathy, Stanford
6.6 GB
validation exempted