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IGVFFI5156ENLL

released
validated
File Set
IGVFDS2018URDY(single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
cell hashing barcodes
Analysis Step Version
/analysis-step-versions/49020a48-9224-4d9c-8d55-2264aaf17a1f/
File Format
tsv
Content Type
cell hashing barcodes
Aliases
ansuman-satpathy:igvf10_multiseq_count_matrix_10x1
md5sum
e4303887dd5881a7d68c2e99f9b373a6
Content MD5sum
95905f07574c0da15e27f18329a0d94a
File Size
720 KB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/multi_tsvs/e10l1_tag_mtx.tsv.gz
Checkfiles Version
v16
Attribution
Ansuman Satpathy, Stanford

File Format Specifications

1 item
Page
Description
Type
Download
Standardized File Format
Preview
MULTI-seq barcode count matrix definition
file format specification

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male) Jurkat cell line treated with 100 ng/mL phorbol 13-acetate 12-myristate for 4 hours, 5 μg/mL T-cell surface glycoprotein CD3 gamma chain for 4 hours; Homo sapiens (female) K562 cell line modified with CRISPRi Sp-dCas9-KOX1-KRAB; ... and 8 more samples

Files This File Derives From

8 items
fastq
reads
Ansuman Satpathy, Stanford
661 MB
validated
fastq
reads
Ansuman Satpathy, Stanford
199 MB
validated
fastq
reads
Ansuman Satpathy, Stanford
246 MB
validated
fastq
reads
Ansuman Satpathy, Stanford
1.5 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
656 MB
validated
fastq
reads
Ansuman Satpathy, Stanford
1.5 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
248 MB
validated
fastq
reads
Ansuman Satpathy, Stanford
197 MB
validated