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IGVFFI5147ATGO

released
validated
File Set
IGVFDS8114MQYA(CRISPR HiCAR integrating a guide (sgRNA) library targeting accessible genome regions in a genomic locus and a non-targeting guide (sgRNA) library)
Summary
GRCh38 differential chromatin contact quantifications
Analysis Step Version
/analysis-step-versions/0622140a-5e26-4deb-a308-89561ca11e22/
File Format
csv
Content Type
differential chromatin contact quantifications
Aliases
charles-gersbach:tabular-file-crispri-DEanalysis
md5sum
644a214e99a1a8555012e84ae3b19b85
Content MD5sum
257b1e916b96c77e288ac2f1ed7ec269
File Size
7.9 KB
Submitted File Name
/hpc/group/gersbachlab/tda17/IGVF_data_files/HiCAR/output/Count_matrix_and_DESeq2/CRISPRi.Region3_vs_nontarget_Union_10kb_DE_results.csv.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Charles Gersbach, Duke

Reference Source Details

Genome Assembly
GRCh38

File Format Specifications

1 item
Page
Description
Type
Download
Standardized File Format
Preview
DESeq2 results
file format specification

Samples

4 items
Sample Terms
Summary
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days transduced (lentivirus) with a guide library

Files This File Derives From

1 item
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
tsv
bin paired count
Charles Gersbach, Duke
1.7 KB
validated