{
"@context": "/terms/",
"@id": "/tabular-files/IGVFFI5136UFZR/",
"@type": [
"TabularFile",
"File",
"Item"
],
"accession": "IGVFFI5136UFZR",
"assay_titles": [],
"audit": {
"NOT_COMPLIANT": [
{
"category": "missing file format specifications",
"detail": "Tabular file [IGVFFI5136UFZR](/tabular-files/IGVFFI5136UFZR/) has no `file_format_specifications`. Tabular files are expected to link to a file format specifications document describing the headers of the file.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_tabular_file_no_file_format_specifications",
"path": "/tabular-files/IGVFFI5136UFZR/"
}
]
},
"award": {
"@id": "/awards/HG012077/",
"component": "mapping"
},
"barcode_map_for": [
"/multiplexed-samples/IGVFSM1676SYRC/",
"/multiplexed-samples/IGVFSM1955RVUC/",
"/multiplexed-samples/IGVFSM8093RPKR/",
"/multiplexed-samples/IGVFSM9603DIDI/",
"/multiplexed-samples/IGVFSM6958ESMJ/",
"/multiplexed-samples/IGVFSM6546CQJB/",
"/multiplexed-samples/IGVFSM8722YQAW/",
"/multiplexed-samples/IGVFSM2294BOOU/"
],
"content_md5sum": "3205cb77c1f34b7ba0574c8c991984f1",
"content_type": "barcode to sample mapping",
"controlled_access": false,
"creation_timestamp": "2024-09-03T23:34:11.194262+00:00",
"description": "Barcode mapping file for subpool derived from the B01 plate",
"file_format": "tsv",
"file_set": {
"@id": "/curated-sets/IGVFDS9339IZIB/",
"accession": "IGVFDS9339IZIB",
"file_set_type": "barcodes",
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM1676SYRC/",
"accession": "IGVFSM1676SYRC",
"classifications": [
"multiplexed sample"
],
"disease_terms": [],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000646/",
"term_name": "left cerebral cortex"
}
],
"summary": "multiplexed sample: left cerebral cortex tissue, female, Mus musculus CASTJ (72 days); left cerebral cortex tissue, male, Mus musculus B6J (72 days); ... and 6 more samples"
},
{
"@id": "/multiplexed-samples/IGVFSM1955RVUC/",
"accession": "IGVFSM1955RVUC",
"classifications": [
"multiplexed sample"
],
"disease_terms": [],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000646/",
"term_name": "left cerebral cortex"
}
],
"summary": "multiplexed sample: left cerebral cortex tissue, female, Mus musculus CASTJ (72 days); left cerebral cortex tissue, male, Mus musculus B6J (72 days); ... and 6 more samples"
},
{
"@id": "/multiplexed-samples/IGVFSM8093RPKR/",
"accession": "IGVFSM8093RPKR",
"classifications": [
"multiplexed sample"
],
"disease_terms": [],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000646/",
"term_name": "left cerebral cortex"
}
],
"summary": "multiplexed sample: left cerebral cortex tissue, female, Mus musculus CASTJ (72 days); left cerebral cortex tissue, male, Mus musculus B6J (72 days); ... and 6 more samples"
},
{
"@id": "/multiplexed-samples/IGVFSM9603DIDI/",
"accession": "IGVFSM9603DIDI",
"classifications": [
"multiplexed sample"
],
"disease_terms": [],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000646/",
"term_name": "left cerebral cortex"
}
],
"summary": "multiplexed sample: left cerebral cortex tissue, female, Mus musculus CASTJ (72 days); left cerebral cortex tissue, male, Mus musculus B6J (72 days); ... and 6 more samples"
},
{
"@id": "/multiplexed-samples/IGVFSM6958ESMJ/",
"accession": "IGVFSM6958ESMJ",
"classifications": [
"multiplexed sample"
],
"disease_terms": [],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000646/",
"term_name": "left cerebral cortex"
}
],
"summary": "multiplexed sample: left cerebral cortex tissue, female, Mus musculus CASTJ (72 days); left cerebral cortex tissue, male, Mus musculus B6J (72 days); ... and 6 more samples"
},
{
"@id": "/multiplexed-samples/IGVFSM6546CQJB/",
"accession": "IGVFSM6546CQJB",
"classifications": [
"multiplexed sample"
],
"disease_terms": [],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000646/",
"term_name": "left cerebral cortex"
}
],
"summary": "multiplexed sample: left cerebral cortex tissue, female, Mus musculus CASTJ (72 days); left cerebral cortex tissue, male, Mus musculus B6J (72 days); ... and 6 more samples"
},
{
"@id": "/multiplexed-samples/IGVFSM8722YQAW/",
"accession": "IGVFSM8722YQAW",
"classifications": [
"multiplexed sample"
],
"disease_terms": [],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000646/",
"term_name": "left cerebral cortex"
}
],
"summary": "multiplexed sample: left cerebral cortex tissue, female, Mus musculus CASTJ (72 days); left cerebral cortex tissue, male, Mus musculus B6J (72 days); ... and 6 more samples"
},
{
"@id": "/multiplexed-samples/IGVFSM2294BOOU/",
"accession": "IGVFSM2294BOOU",
"classifications": [
"multiplexed sample"
],
"disease_terms": [],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000646/",
"term_name": "left cerebral cortex"
}
],
"summary": "multiplexed sample: left cerebral cortex tissue, female, Mus musculus CASTJ (72 days); left cerebral cortex tissue, male, Mus musculus B6J (72 days); ... and 6 more samples"
}
],
"summary": "Mus musculus barcodes",
"taxa": "Mus musculus"
},
"file_size": 960,
"gene_list_for": [],
"href": "/tabular-files/IGVFFI5136UFZR/@@download/IGVFFI5136UFZR.tsv.gz",
"input_file_for": [],
"integrated_in": [],
"lab": {
"@id": "/labs/ali-mortazavi/",
"title": "Ali Mortazavi, UCI"
},
"loci_list_for": [],
"md5sum": "bffa59d0bcc3f07392f2c810718f78f7",
"release_timestamp": "2024-09-05T18:27:37.778253+00:00",
"s3_uri": "s3://igvf-files/2024/09/03/24557de2-fd6d-47ab-8036-2486722445d4/IGVFFI5136UFZR.tsv.gz",
"schema_version": "11",
"status": "released",
"submitted_by": {
"@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
"title": "Diane Trout"
},
"submitted_file_name": "IGVF_B01_barcode_sample_map.tsv.gz",
"summary": "barcode to sample mapping",
"upload_status": "validated",
"uuid": "24557de2-fd6d-47ab-8036-2486722445d4"
}