{
"@context": "/terms/",
"@id": "/tabular-files/IGVFFI5029GJRL/",
"@type": [
"TabularFile",
"File",
"Item"
],
"accession": "IGVFFI5029GJRL",
"aliases": [
"buenrostro-bernstein:surya-mouse-colitis-adenoma-tissue-atac-frag"
],
"analysis_step_version": "/analysis-step-versions/e27a16d2-c700-405f-92c4-89efe1a558ce/",
"assay_titles": [
"SHARE-seq"
],
"audit": {},
"award": {
"@id": "/awards/HG011986/",
"component": "mapping"
},
"barcode_map_for": [],
"checkfiles_version": "v17",
"content_md5sum": "7b9c2675dbac096cc169849eb8e64bdf",
"content_type": "fragments",
"controlled_access": false,
"creation_timestamp": "2025-03-06T16:38:46.983492+00:00",
"derived_from": [
"/sequence-files/IGVFFI6922GMNK/",
"/sequence-files/IGVFFI2941MMCJ/",
"/sequence-files/IGVFFI1350CWOS/",
"/sequence-files/IGVFFI9369ACGK/",
"/sequence-files/IGVFFI9334WAOR/",
"/sequence-files/IGVFFI4354ROOZ/"
],
"file_format": "tsv",
"file_format_specifications": [
"/documents/df51876b-1c01-40e6-b68c-8b2342bbd8b6/"
],
"file_set": {
"@id": "/analysis-sets/IGVFDS5153IDEO/",
"@type": [
"AnalysisSet",
"FileSet",
"Item"
],
"accession": "IGVFDS5153IDEO",
"file_set_type": "intermediate analysis",
"samples": [
{
"@id": "/tissues/IGVFSM6844DNNZ/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6844DNNZ",
"classifications": [
"tissue"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0001155/",
"status": "released",
"term_name": "colon"
}
],
"status": "released",
"summary": "Mus musculus C57BL/6J colon tissue",
"taxa": "Mus musculus"
}
],
"status": "released",
"summary": "single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq): fragments, sparse gene count matrix"
},
"file_size": 4005456529,
"gene_list_for": [],
"href": "/tabular-files/IGVFFI5029GJRL/@@download/IGVFFI5029GJRL.tsv.gz",
"input_file_for": [],
"integrated_in": [],
"lab": {
"@id": "/labs/jason-buenrostro/",
"title": "Jason Buenrostro, Broad"
},
"loci_list_for": [],
"md5sum": "44053d4f235cc11b3f14cc92a497adc1",
"quality_metrics": [],
"release_timestamp": "2025-03-26T19:25:46.775783+00:00",
"s3_uri": "s3://igvf-files/2025/03/06/5301fb30-e9f6-47f8-a714-720b67db47b9/IGVFFI5029GJRL.tsv.gz",
"schema_version": "15",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_file_name": "gs://sw-igvf-submission/surya-mouse-colitis/processed-data/mouse_adenoma_tissue.ATAC.fragments.tsv.gz",
"summary": "fragments",
"upload_status": "validated",
"uuid": "5301fb30-e9f6-47f8-a714-720b67db47b9",
"workflow": {
"@id": "/workflows/IGVFWF0507XZOR/",
"name": "SHARE-seq-alignmentV2",
"uniform_pipeline": false
}
}