IGVFFI4907GYFZ

released
validation exempted
File Set
IGVFDS6435ALNY(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)
Summary
fragments
Analysis Step Version
File Format
tsv
Content Type
fragments
Aliases
ansuman-satpathy:igvf9_fragments_10x2
md5sum
d82c0730a021ef69b13197aa04208a4a
Content MD5sum
2cde63ec29dcf22ccc59309e55fdc328
File Size
6.6 GB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf9/e9l2_fragments.tsv.gz
Checkfiles Version
Validation Error Detail
{"tabular_file_error": {"schema": null, "error_number_limit": 1000, "number_of_errors": 1000, "extra-cell": {"count": 1000, "description": "This row has more values compared to the header row (the first row in the data source). A key concept is that all the rows in tabular data must have the same number of columns.", "details": [{"row_number": 52, "field_number": 2, "note": ""}, {"row_number": 52, "field_number": 3, "note": ""}]}, "error_types": ["extra-cell"]}}

File Format Specifications

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 1 day; Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 5 days; ... and 5 more samples

Files This File Derives From

12 items
fastq
reads
Ansuman Satpathy, Stanford
2.7 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
12 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
12 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
6.7 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
6.9 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
6.7 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
12 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
12 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
2.7 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
12 GB
validated

Files Derived From This File

2 items
bed
peaks
GRCh38 peaks
Ansuman Satpathy, Stanford
1.7 MB
validation exempted
tbi
index
index of IGVFFI4907GYFZ
Ansuman Satpathy, Stanford
1.7 MB
validated

Attribution