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IGVFFI4884FITS

released
validated
File Set
IGVFDS7239LNZO(CRISPR knockout RNA-seq integrating a guide (sgRNA) library targeting transcription start sites in GATA3 and a non-targeting guide (sgRNA) library with non-targeting control)
Summary
GRCh38 fold change over control
Analysis Step Version
/analysis-step-versions/a6d3968e-0580-4ec7-90a2-541324156967/
File Format
tsv
Content Type
fold change over control
Aliases
charles-gersbach:cd8-tcells-deseq2-results-rna-seq-cas-ko-gata3
md5sum
8e7f8237f8ffab78675e627b5bba7ab5
Content MD5sum
934621a12d1ece959e2bff2d6a0d5fd4
File Size
885 KB
Submitted File Name
/data/reddylab/Alex/IGVF/data_submissions/processed_data/AIM_2_T_cell_project_1/T7C_GATA3_KO_RNA-seq.simple.txt.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Charles Gersbach, Duke

Reference Source Details

Genome Assembly
GRCh38

File Format Specifications

1 item
Page
Description
Type
Download
Standardized File Format
Preview
DESeq2 results
file format specification

Samples

6 items
Sample Terms
Summary
PrimaryCell
Homo sapiens CD8-positive, alpha-beta memory T cell modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)
PrimaryCell
Homo sapiens CD8-positive, alpha-beta memory T cell modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)
PrimaryCell
Homo sapiens CD8-positive, alpha-beta memory T cell modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)
PrimaryCell
Homo sapiens CD8-positive, alpha-beta memory T cell modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)
PrimaryCell
Homo sapiens CD8-positive, alpha-beta memory T cell modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)
PrimaryCell
Homo sapiens CD8-positive, alpha-beta memory T cell modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)

Files This File Derives From

1 item
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
tsv
transcript quantifications
Charles Gersbach, Duke
547 KB
validated