IGVFFI4763UQQR

released
validation exempted
File Set
IGVFDS8205NXKP(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)
Summary
fragments
Analysis Step Version
File Format
tsv
Content Type
fragments
Aliases
ansuman-satpathy:igvf1_fragments_10x1
md5sum
cbe9e2a185c4cc723961e9a1fa12cb7a
Content MD5sum
bb3dd4309f8e6e37cdde34a05c86cce6
File Size
3.5 GB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf1/e1l1_fragments.tsv.gz
Checkfiles Version
Validation Error Detail
{"tabular_file_error": {"schema": null, "error_number_limit": 1000, "number_of_errors": 1000, "extra-cell": {"count": 1000, "description": "This row has more values compared to the header row (the first row in the data source). A key concept is that all the rows in tabular data must have the same number of columns.", "details": [{"row_number": 52, "field_number": 2, "note": ""}, {"row_number": 52, "field_number": 3, "note": ""}]}, "error_types": ["extra-cell"]}}

File Format Specifications

Samples

2 items
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: HAP-1 cell line, male, Homo sapiens; HAP-1 cell line, male, Homo sapiens; ... and 13 more samples
MultiplexedSample
multiplexed sample: HAP-1 cell line, male, Homo sapiens; HAP-1 cell line, male, Homo sapiens; ... and 13 more samples

Files This File Derives From

8 items
fastq
reads
Ansuman Satpathy, Stanford
4.7 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
8.6 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
8.7 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
8.5 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
2.0 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
4.7 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
1.9 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
8.6 GB
validated

Files Derived From This File

2 items
bed
peaks
GRCh38 peaks
Ansuman Satpathy, Stanford
1.7 MB
validation exempted
tbi
index
index of IGVFFI4763UQQR
Ansuman Satpathy, Stanford
1.3 MB
validated

Attribution