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IGVFFI4745FFZE

released
validated
File Set
IGVFDS0872LUHP(CRISPR HiCAR integrating a guide (sgRNA) library targeting accessible genome regions in a genomic locus and a non-targeting guide (sgRNA) library)
Summary
GRCm39 bin paired count
Analysis Step Version
/analysis-step-versions/7a065c7f-9076-4e55-ae0a-8c0ae1b1c13e/
File Format
tsv
Content Type
bin paired count
Aliases
charles-gersbach:tabular-file-crispra-HL1-region3-count
md5sum
0dffebd33171ef6a44f9d48e2b15ae9c
Content MD5sum
515138a2450bd94be0099199d084a965
File Size
2.1 KB
Submitted File Name
/hpc/group/gersbachlab/tda17/IGVF_data_files/HiCAR/output/Count_matrix_and_DESeq2/HL1_Region3_active_vs_nontarget_ctrl_Union_10kb_count_mat.tsv.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Charles Gersbach, Duke

Reference Source Details

Genome Assembly
GRCm39

File Format Specifications

1 item
Page
Description
Type
Download
Standardized File Format
Preview
Gene counts table
file format specification

Samples

6 items
Sample Terms
Summary
InVitroSystem
Mus musculus C57BL/6J (female) HL-1 cell line transduced (lentivirus) with a guide library
InVitroSystem
Mus musculus C57BL/6J (female) HL-1 cell line transduced (lentivirus) with a guide library
InVitroSystem
Mus musculus C57BL/6J (female) HL-1 cell line transduced (lentivirus) with a guide library
InVitroSystem
Mus musculus C57BL/6J (female) HL-1 cell line transduced (lentivirus) with a guide library
InVitroSystem
Mus musculus C57BL/6J (female) HL-1 cell line transduced (lentivirus) with a guide library
InVitroSystem
Mus musculus C57BL/6J (female) HL-1 cell line transduced (lentivirus) with a guide library

Files This File Derives From

6 items
cool
contact matrix
Charles Gersbach, Duke
11 MB
validated
cool
contact matrix
Charles Gersbach, Duke
12 MB
validated
cool
contact matrix
Charles Gersbach, Duke
11 MB
validated
cool
contact matrix
Charles Gersbach, Duke
12 MB
validated
cool
contact matrix
Charles Gersbach, Duke
12 MB
validated
cool
contact matrix
Charles Gersbach, Duke
13 MB
validated

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
csv
differential chromatin contact quantifications
GRCm39 differential chromatin contact quantifications
Charles Gersbach, Duke
6.8 KB
validated