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IGVFFI4661JKOA

released
validation exempted
File Set
IGVFDS6219XNKZ(SUPERSTARR: alignments, index, reporter genomic variant effects, reporter variants)
Summary
GRCh38 reporter variants
Analysis Step Version
/analysis-step-versions/c8de4554-6fda-4373-aa41-5574220df999/
File Format
tsv
Content Type
reporter variants
Aliases
tim-reddy:starr-seq-bird-input-file-P016
md5sum
d10faffc192a313b9b70e81f042d65a0
Content MD5sum
c54c3032396f3dda0c3c4efa6772c576
File Size
20 MB
Submitted File Name
/data/reddylab/Alex/IGVF/data_submissions/processed_data/AIM_1_STARR_seq/K562.starrseq.bird_input.spdi.pool16.txt.gz
Checkfiles Version
v16
Attribution
Bill Majoros, Duke

Reference Source Details

Genome Assembly
GRCh38

File Format Specifications

1 item
Page
Description
Type
Download
Preview
BIRD input file format as described in http://www.geneprediction.org/bird
file format specification

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens (female) K562 cell line transfected with a reporter library

Files This File Derives From

2 items
bam
alignments
Tim Reddy, Duke
6.9 GB
validated
bam
alignments
Tim Reddy, Duke
10.0 GB
validated

Files Derived From This File

2 items
tsv
reporter genomic variant effects
GRCh38 reporter genomic variant effects
Bill Majoros, Duke
47 MB
validated
tsv
reporter genomic variant effects
GRCh38 reporter genomic variant effects
Bill Majoros, Duke
102 MB
validated