IGVFFI4483MEPB

released
validation exempted
File Set
IGVFDS5437FJHN(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)
Summary
fragments
Analysis Step Version
File Format
tsv
Content Type
fragments
Aliases
ansuman-satpathy:igvf12_fragments_10x7
md5sum
8c768493105c6e2007ca0d071a44c8bd
Content MD5sum
e99a07d0bd9038a85ad84802a50d045d
File Size
7.3 GB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf12/e12l7_fragments.tsv.gz
Checkfiles Version
Validation Error Detail
{"tabular_file_error": {"schema": null, "error_number_limit": 1000, "number_of_errors": 1000, "extra-cell": {"count": 1000, "description": "This row has more values compared to the header row (the first row in the data source). A key concept is that all the rows in tabular data must have the same number of columns.", "details": [{"row_number": 52, "field_number": 2, "note": ""}, {"row_number": 52, "field_number": 3, "note": ""}]}, "error_types": ["extra-cell"]}}

File Format Specifications

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples

Files This File Derives From

28 items
fastq
reads
Ansuman Satpathy, Stanford
5.1 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
5.1 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
1.1 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
5.0 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
5.1 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
2.8 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
2.8 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
2.8 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
5.1 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
5.0 GB
validated

Files Derived From This File

2 items
bed
peaks
GRCh38 peaks
Ansuman Satpathy, Stanford
1.1 MB
validation exempted
tbi
index
index of IGVFFI4483MEPB
Ansuman Satpathy, Stanford
1.9 MB
validated

Attribution