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},
{
"@id": "/in-vitro-systems/IGVFSM8265LJQT/",
"accession": "IGVFSM8265LJQT",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
"modality": "interference",
"status": "in progress",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "TeloHAEC cell line, female, Homo sapiens (sorting details: FACS 80-100% expression of NFKBIA) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM7144FDQS/",
"accession": "IGVFSM7144FDQS",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
"modality": "interference",
"status": "in progress",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "TeloHAEC cell line, female, Homo sapiens (sorting details: FACS 60-80% expression of NFKBIA) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM9081MWUS/",
"accession": "IGVFSM9081MWUS",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
"modality": "interference",
"status": "in progress",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "TeloHAEC cell line, female, Homo sapiens (sorting details: FACS 0-20% expression of NFKBIA) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM1726EBEW/",
"accession": "IGVFSM1726EBEW",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
"modality": "interference",
"status": "in progress",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "TeloHAEC cell line, female, Homo sapiens (sorting details: FACS 60-80% expression of NFKBIA) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM0866KWRP/",
"accession": "IGVFSM0866KWRP",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
"modality": "interference",
"status": "in progress",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "TeloHAEC cell line, female, Homo sapiens (sorting details: FACS 20-40% expression of NFKBIA) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM0037PWFA/",
"accession": "IGVFSM0037PWFA",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
"modality": "interference",
"status": "in progress",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "TeloHAEC cell line, female, Homo sapiens (sorting details: FACS 0-20% expression of NFKBIA) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM5162TJUW/",
"accession": "IGVFSM5162TJUW",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
"modality": "interference",
"status": "in progress",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "TeloHAEC cell line, female, Homo sapiens (sorting details: FACS 60-80% expression of NFKBIA) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM1381LSPK/",
"accession": "IGVFSM1381LSPK",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
"modality": "interference",
"status": "in progress",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "TeloHAEC cell line, female, Homo sapiens (sorting details: FACS 20-40% expression of NFKBIA) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM9177FKXG/",
"accession": "IGVFSM9177FKXG",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
"modality": "interference",
"status": "in progress",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "TeloHAEC cell line, female, Homo sapiens (sorting details: FACS 80-100% expression of NFKBIA) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM6414TXBV/",
"accession": "IGVFSM6414TXBV",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
"modality": "interference",
"status": "in progress",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "TeloHAEC cell line, female, Homo sapiens (sorting details: FACS 80-100% expression of NFKBIA) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM0108TODH/",
"accession": "IGVFSM0108TODH",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
"modality": "interference",
"status": "in progress",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "TeloHAEC cell line, female, Homo sapiens (sorting details: FACS 20-40% expression of NFKBIA) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM5246XKEH/",
"accession": "IGVFSM5246XKEH",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
"modality": "interference",
"status": "in progress",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "TeloHAEC cell line, female, Homo sapiens (sorting details: FACS 0-20% expression of NFKBIA) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM1322POFE/",
"accession": "IGVFSM1322POFE",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
"modality": "interference",
"status": "in progress",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "TeloHAEC cell line, female, Homo sapiens (sorting details: FACS 60-80% expression of NFKBIA) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
}
],
"status": "released",
"summary": "CRISPR interference FlowFISH screen, Proliferation CRISPR interference screen targeting NFKBIA: guide quantifications"
},
"file_size": 325627,
"gene_list_for": [],
"href": "/tabular-files/IGVFFI4455WXXM/@@download/IGVFFI4455WXXM.csv.gz",
"input_file_for": [
"/tabular-files/IGVFFI1080RSSU/"
],
"integrated_in": [],
"lab": {
"@id": "/labs/guillaume-lettre/",
"title": "Guillaume Lettre, MHI"
},
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"md5sum": "c38fbc3b953618778dbf9f5ece58f1e7",
"quality_metrics": [],
"release_timestamp": "2025-03-07T23:06:18.270842+00:00",
"s3_uri": "s3://igvf-files/2025/03/04/7be281df-2495-40e6-ada1-a35d9548cc46/IGVFFI4455WXXM.csv.gz",
"schema_version": "13",
"status": "released",
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"title": "Ken Sin Lo"
},
"submitted_file_name": "/home/lokensin/projects/rrg-glettre/lokensin/IGVF/Submission_DACC_20250304/BP_Pilot_KRAB_flowfish_Mageck_count.txt.gz",
"summary": "guide quantifications",
"upload_status": "validated",
"uuid": "7be281df-2495-40e6-ada1-a35d9548cc46",
"workflow": {
"@id": "/workflows/IGVFWF7224ABWD/",
"name": "MAGeCK CRISPR screen workflow",
"uniform_pipeline": false
}
}