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IGVFFI4410YZQZ

preview
validated
This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS4252LFRU(CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci: filtered feature barcode matrix, raw feature barcode matrix, sparse gene count matrix, unfiltered global differential expression, unfiltered local differential expression)
Summary
GRCh38 GENCODE 32 unfiltered local differential expression
Analysis Step Version
/analysis-step-versions/4cfc022a-ff63-4d13-99f7-257a6bfe4bd7/
File Format
csv
Content Type
unfiltered local differential expression
Aliases
gary-hon:WTC11_CM_Pilot2_Mini_PB9_PrimaryAnalysis_DE_local
md5sum
5529ced80d67d34b604a49a2e7a0404a
Content MD5sum
bb47f7aa7953e65e1f9d937c395052c4
File Size
6.6 KB
Submitted File Name
/project/GCRB/Hon_lab/s215194/IGVF/data_submission/reference_files/WTC11_CM_Pilot2_Mini_PB9_PrimaryAnalysis_DE_local.csv.gz
Checkfiles Version
v16
Attribution
Gary Hon, UT

Reference Source Details

Genome Assembly
GRCh38
Transcriptome Annotation
GENCODE 32

File Format Specifications

1 item
Page
Description
Type
Download
Preview
pySpade Differential Expression table definitions
file format specification

Samples

4 items
Sample Terms
Summary
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW438) modified with CRISPRi Sp-dCas9, 3 week(s) after transfection with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW435) modified with CRISPRi Sp-dCas9, 3 week(s) after transfection with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW437) modified with CRISPRi Sp-dCas9, 3 week(s) after transfection with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW436) modified with CRISPRi Sp-dCas9, 3 week(s) after transfection with a guide library

Files This File Derives From

2 items
hdf5
filtered feature barcode matrix
Gary Hon, UT
674 MB
validated
pkl
raw feature barcode matrix
Gary Hon, UT
2.0 GB
validated