IGVFFI4223LNAY

revoked
validated
1{
2    "@context": "/terms/",
3    "@id": "/tabular-files/IGVFFI4223LNAY/",
4    "@type": [
5        "TabularFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI4223LNAY",
10    "aliases": [
11        "charles-gersbach:cd8-tcell-ko-nt-grnas-metadata"
12    ],
13    "assay_titles": [],
14    "assembly": "GRCh38",
15    "audit": {
16        "NOT_COMPLIANT": [
17            {
18                "category": "missing file format specifications",
19                "detail": "Tabular file [IGVFFI4223LNAY](/tabular-files/IGVFFI4223LNAY/) has no `file_format_specifications`. Tabular files, with the exception of vcf files, are expected to link to a file format specifications document describing the headers of the file.",
20                "level": 50,
21                "level_name": "NOT_COMPLIANT",
22                "name": "audit_file_no_file_format_specifications",
23                "path": "/tabular-files/IGVFFI4223LNAY/"
24            }
25        ]
26    },
27    "award": {
28        "@id": "/awards/HG012053/",
29        "component": "functional characterization"
30    },
31    "barcode_map_for": [],
32    "checkfiles_version": "v14",
33    "content_md5sum": "6c8839d158273dcb5695cc689b0a8823",
34    "content_type": "guide RNA sequences",
35    "controlled_access": false,
36    "creation_timestamp": "2024-06-18T19:40:48.537753+00:00",
37    "file_format": "tsv",
38    "file_set": {
39        "@id": "/curated-sets/IGVFDS1053LAWX/",
40        "@type": [
41            "CuratedSet",
42            "FileSet",
43            "Item"
44        ],
45        "accession": "IGVFDS1053LAWX",
46        "file_set_type": "guide RNAs",
47        "status": "in progress",
48        "summary": "Homo sapiens GRCh38 guide RNAs",
49        "taxa": "Homo sapiens"
50    },
51    "file_size": 170,
52    "gene_list_for": [],
53    "href": "/tabular-files/IGVFFI4223LNAY/@@download/IGVFFI4223LNAY.tsv.gz",
54    "input_file_for": [],
55    "integrated_in": [],
56    "lab": {
57        "@id": "/labs/charles-gersbach/",
58        "title": "Charles Gersbach, Duke"
59    },
60    "loci_list_for": [],
61    "md5sum": "f43b04d736e15b85a589b833b27159a8",
62    "primer_design_for": [],
63    "quality_metrics": [],
64    "release_timestamp": "2025-02-05T21:27:56.893705+00:00",
65    "revoke_detail": "There is an updated version of this file: IGVFFI7982RBWP with ensembl IDs and new column names.",
66    "s3_uri": "s3://igvf-files/2024/06/18/ab5ec04e-e530-45a8-8fb5-be6bebfb4d0e/IGVFFI4223LNAY.tsv.gz",
67    "schema_version": "15",
68    "status": "revoked",
69    "submitted_by": {
70        "@id": "/users/29f5f78d-ac90-421e-90c6-a90e1dc407a7/",
71        "title": "Alejandro Barrera"
72    },
73    "submitted_file_name": "/data/reddylab/Alex/IGVF/data_submissions/reference_data/AIM_2_T_cell_project_1/cas9_ko.nt.igvf_metadata.v3.txt.gz",
74    "summary": "GRCh38 guide RNA sequences",
75    "upload_status": "validated",
76    "uuid": "ab5ec04e-e530-45a8-8fb5-be6bebfb4d0e"
77}