IGVFFI4181HUXG

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/tabular-files/IGVFFI4181HUXG/",
4    "@type": [
5        "TabularFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI4181HUXG",
10    "aliases": [
11        "tim-reddy:starr-seq-variants-vcf-P006"
12    ],
13    "analysis_step_version": "/analysis-step-versions/c8de4554-6fda-4373-aa41-5574220df999/",
14    "assay_titles": [],
15    "assembly": "GRCh38",
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012053/",
19        "component": "functional characterization"
20    },
21    "barcode_map_for": [],
22    "checkfiles_version": "v17",
23    "content_md5sum": "da16ed2275ad4dec67c13b2ab36d77b6",
24    "content_type": "variants",
25    "controlled_access": false,
26    "creation_timestamp": "2025-02-24T17:20:11.326881+00:00",
27    "file_format": "vcf",
28    "file_set": {
29        "@id": "/curated-sets/IGVFDS5704VRNY/",
30        "@type": [
31            "CuratedSet",
32            "FileSet",
33            "Item"
34        ],
35        "accession": "IGVFDS5704VRNY",
36        "file_set_type": "variants",
37        "status": "released",
38        "summary": "Homo sapiens GRCh38 variants",
39        "taxa": "Homo sapiens"
40    },
41    "file_size": 2458470465,
42    "gene_list_for": [],
43    "href": "/tabular-files/IGVFFI4181HUXG/@@download/IGVFFI4181HUXG.vcf.gz",
44    "input_file_for": [],
45    "integrated_in": [
46        {
47            "@id": "/construct-library-sets/IGVFDS7928ECWE/",
48            "applied_to_samples": [
49                {
50                    "@id": "/in-vitro-systems/IGVFSM0425IKAI/",
51                    "sample_terms": [
52                        {
53                            "@id": "/sample-terms/EFO_0002067/",
54                            "summary": "K562",
55                            "term_name": "K562"
56                        }
57                    ],
58                    "summary": "Homo sapiens (female) K562 cell line transfected with a reporter library"
59                }
60            ],
61            "file_set_type": "reporter library",
62            "status": "released",
63            "summary": "reporter library targeting random selections genome-wide"
64        }
65    ],
66    "lab": {
67        "@id": "/labs/tim-reddy/",
68        "title": "Tim Reddy, Duke"
69    },
70    "loci_list_for": [],
71    "md5sum": "82e0f0b6769509163e1fa186beb4f887",
72    "primer_design_for": [],
73    "quality_metrics": [],
74    "release_timestamp": "2025-04-09T16:43:03.008006+00:00",
75    "s3_uri": "s3://igvf-files/2025/02/24/27f6ee63-25e5-4468-a086-ecca137bcdd0/IGVFFI4181HUXG.vcf.gz",
76    "schema_version": "15",
77    "status": "released",
78    "submitted_by": {
79        "@id": "/users/29f5f78d-ac90-421e-90c6-a90e1dc407a7/",
80        "title": "Alejandro Barrera"
81    },
82    "submitted_file_name": "/data/reddylab/Alex/IGVF/data_submissions/reference_data/AIM_1_STARR_seq/variants.1000G.pool6.fixed.vcf.gz",
83    "summary": "GRCh38 variants",
84    "upload_status": "validated",
85    "uuid": "27f6ee63-25e5-4468-a086-ecca137bcdd0",
86    "workflow": {
87        "@id": "/workflows/IGVFWF6957ZNII/",
88        "name": "SUPERSTARR Pipeline",
89        "uniform_pipeline": false
90    }
91}