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IGVFFI4030SCVB

released
validation exempted
File Set
IGVFDS0287NOBE(single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
GRCh38 peaks
Analysis Step Version
/analysis-step-versions/699d6738-4033-4afc-b6f3-1d82a80e0b41/
File Format
bed
Content Type
peaks
Aliases
ansuman-satpathy:igvf6_peaks_10x4
md5sum
ec345f69193f10cefb47b4f10cb33151
Content MD5sum
b9f6f1155e9e26fc234907a716df7249
File Size
2.4 MB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf6/e6l4_peaks.bed
Checkfiles Version
v14
Validation Error Detail
{"md5sum": "original md5sum b9f6f1155e9e26fc234907a716df7249 does not match newly calculated md5sum ec345f69193f10cefb47b4f10cb33151.", "validate_files": "Error [file=/home/ubuntu/igvf-files/2025/01/28/773d9428-7af8-4854-bcd4-ee3a07aeeee2/IGVFFI4030SCVB.bed.gz, line=290164]: chrom KI270728.1 not found [KI270728.1\t232287\t233183]\nAborting ... found error."}
Attribution
Ansuman Satpathy, Stanford

Reference Source Details

Genome Assembly
GRCh38

File Format Specifications

1 item
Page
Description
Type
Download
Standardized File Format
Preview
10X Genomics Peaks Bedfile
file format specification

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male) H1-hESC differentiated cell specimen induced to islet of Langerhans for 18 days; Homo sapiens (male) H1-hESC differentiated cell specimen induced to islet of Langerhans for 7 days; ... and 6 more samples

Files This File Derives From

1 item
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
tsv
fragments
Ansuman Satpathy, Stanford
6.2 GB
validation exempted