IGVFFI4030SCVB

released

validation exempted

File Set

IGVFDS3232NVVG(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)

Summary

GRCh38 peaks

Analysis Step Version

/analysis-step-versions/699d6738-4033-4afc-b6f3-1d82a80e0b41/

File Format

bed

Content Type

peaks

Aliases

ansuman-satpathy:igvf6_peaks_10x4

md5sum

ec345f69193f10cefb47b4f10cb33151

Content MD5sum

b9f6f1155e9e26fc234907a716df7249

File Size

2.4 MB

Submitted File Name

/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf6/e6l4_peaks.bed

Checkfiles Version

v14

Validation Error Detail

{"md5sum": "original md5sum b9f6f1155e9e26fc234907a716df7249 does not match newly calculated md5sum ec345f69193f10cefb47b4f10cb33151.", "validate_files": "Error [file=/home/ubuntu/igvf-files/2025/01/28/773d9428-7af8-4854-bcd4-ee3a07aeeee2/IGVFFI4030SCVB.bed.gz, line=290164]: chrom KI270728.1 not found [KI270728.1\t232287\t233183]\nAborting ... found error."}

Reference Source Details

Genome Assembly

GRCh38

File Format Specifications

1 item

Page

Description

Type

Download

Preview

10X Genomics Peaks Bedfile

file format specification

header_peak_set_scATAC_mEB_d21_mm39_20241120.tsv

Samples

4 items

Sample Terms

Disease Terms

Summary

IGVFSM2522EBPE

MultiplexedSample

H1-hESC

multiplexed sample: H1-hESC differentiated cell specimen induced to islet of Langerhans for 18 days, male, Homo sapiens; H1-hESC differentiated cell specimen induced to islet of Langerhans for 7 days, male, Homo sapiens; ... and 6 more samples

MultiplexedSample

MultiplexedSample

MultiplexedSample