IGVFFI3950UKLA

released
validated
File Set
IGVFDS6846CJYR(SUPERSTARR: alignments, index, reporter genomic variant effects, reporter variants)
Summary
GRCh38 reporter genomic variant effects
Analysis Step Version
File Format
tsv
Content Type
reporter genomic variant effects
Aliases
tim-reddy:starr-seq-bird-output-file-P020
md5sum
f07bcd03b40ddb0edef705783e25ac96
Content MD5sum
7adba213e5e5722ca4472cb34d0d5261
File Size
110 MB
Submitted File Name
/data/reddylab/Alex/IGVF/data_submissions/processed_data/AIM_1_STARR_seq/K562.starrseq.bird_output.spdi.pool20.txt.gz
Checkfiles Version
Attribution

Reference Source Details

Genome Assembly
GRCh38

File Format Specifications

1 item
Page
Description
Type
Download
Preview
BIRD output file format as described in http://www.geneprediction.org/bird
file format specification

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens (female) K562 cell line transfected with a reporter library

Files This File Derives From

1 item
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
tsv
reporter variants
Bill Majoros, Duke
47 MB
validation exempted

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
reporter genomic variant effects
GRCh38 reporter genomic variant effects
Bill Majoros, Duke
241 MB
validated