IGVFFI3768EMVG

released
validation exempted
File Set
IGVFDS9170BNTS(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)
Summary
GRCh38 peaks
Analysis Step Version
File Format
bed
Content Type
peaks
Aliases
ansuman-satpathy:igvf3_peaks_10x2
md5sum
16568290d02667cbdcd98146b707d2ea
Content MD5sum
8b0384c7c39d8fc9f4f6b5e405d38b31
File Size
2.0 MB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf3/e3l2_peaks.bed
Checkfiles Version
Validation Error Detail
{"md5sum": "original md5sum 8b0384c7c39d8fc9f4f6b5e405d38b31 does not match newly calculated md5sum 16568290d02667cbdcd98146b707d2ea.", "validate_files": "Error [file=/home/ubuntu/igvf-files/2025/01/28/79add474-615e-4f67-940d-5a71b712816c/IGVFFI3768EMVG.bed.gz, line=244014]: chrom KI270728.1 not found [KI270728.1\t232286\t233178]\nAborting ... found error."}

Reference Source Details

Genome Assembly
GRCh38

File Format Specifications

Samples

4 items
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: H9 differentiated cell specimen induced to cardiac muscle cell for 15 days, female, Homo sapiens; HepG2 cell line, male, Homo sapiens grown in DMEM without serum; ... and 10 more samples
MultiplexedSample
multiplexed sample: H9 differentiated cell specimen induced to cardiac muscle cell for 15 days, female, Homo sapiens; HepG2 cell line, male, Homo sapiens grown in DMEM without serum; ... and 10 more samples
MultiplexedSample
multiplexed sample: H9 differentiated cell specimen induced to cardiac muscle cell for 15 days, female, Homo sapiens; HepG2 cell line, male, Homo sapiens grown in DMEM without serum; ... and 10 more samples
MultiplexedSample
multiplexed sample: H9 differentiated cell specimen induced to cardiac muscle cell for 15 days, female, Homo sapiens; HepG2 cell line, male, Homo sapiens grown in DMEM without serum; ... and 10 more samples

Files This File Derives From

1 item
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
tsv
fragments
Ansuman Satpathy, Stanford
2.5 GB
validation exempted

Attribution