IGVFFI3751JHPD

released

validation exempted

File Set

IGVFDS3751NDQI(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)

Summary

GRCh38 peaks

Analysis Step Version

/analysis-step-versions/699d6738-4033-4afc-b6f3-1d82a80e0b41/

File Format

bed

Content Type

peaks

Aliases

ansuman-satpathy:igvf4_peaks_10x2

md5sum

3edf46bb70105cf95a7162d03f9adb4e

Content MD5sum

b40fc4382b74cf248ebc3fa3f2d63a2f

File Size

2.0 MB

Submitted File Name

/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf4/e4l2_peaks.bed

Checkfiles Version

v14

Validation Error Detail

{"md5sum": "original md5sum b40fc4382b74cf248ebc3fa3f2d63a2f does not match newly calculated md5sum 3edf46bb70105cf95a7162d03f9adb4e.", "validate_files": "Error [file=/home/ubuntu/igvf-files/2025/01/28/f0e9d818-0864-4cf6-bd62-40c580ffc448/IGVFFI3751JHPD.bed.gz, line=248503]: chrom KI270728.1 not found [KI270728.1\t232280\t233171]\nAborting ... found error."}

Reference Source Details

Genome Assembly

GRCh38

File Format Specifications

1 item

Page

Description

Type

Download

Preview

10X Genomics Peaks Bedfile

file format specification

header_peak_set_scATAC_mEB_d21_mm39_20241120.tsv

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7068ZFMY

MultiplexedSample

GM25256 (WTC-11)

multiplexed sample: Homo sapiens (male) GM25256 (WTC-11) cell line treated with 50 ng/mL interleukin 4 for 1 day; Homo sapiens (male) GM25256 (WTC-11) cell line treated with 100 ng/mL macrophage colony-stimulating factor 1 for 7 days; ... and 13 more samples