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IGVFFI3401NJFV

released
validation exempted
File Set
IGVFDS7016ZFVC(single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq): cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)
Summary
GRCh38 peaks
Analysis Step Version
/analysis-step-versions/699d6738-4033-4afc-b6f3-1d82a80e0b41/
File Format
bed
Content Type
peaks
Aliases
ansuman-satpathy:igvf12_peaks_10x5
md5sum
b83f2a4d1e2d451e1f070f4b20bffbf6
Content MD5sum
1fa839c47355cbf36145e0faae6862e4
File Size
1.3 MB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf12/e12l5_peaks.bed
Checkfiles Version
v14
Validation Error Detail
{"md5sum": "original md5sum 1fa839c47355cbf36145e0faae6862e4 does not match newly calculated md5sum b83f2a4d1e2d451e1f070f4b20bffbf6.", "validate_files": "Error [file=/home/ubuntu/igvf-restricted-files/2025/01/28/35e367d7-963a-4385-953e-5da764e64c8c/IGVFFI3401NJFV.bed.gz, line=152845]: chrom KI270728.1 not found [KI270728.1\t232280\t233174]\nAborting ... found error."}
Attribution
Ansuman Satpathy, Stanford

Reference Source Details

Genome Assembly
GRCh38

File Format Specifications

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples

Files This File Derives From

1 item
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
tsv
fragments
Ansuman Satpathy, Stanford
6.5 GB
validation exempted