IGVFFI3401NJFV

released

validation exempted

File Set

IGVFDS7016ZFVC(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)

Summary

GRCh38 peaks

Analysis Step Version

/analysis-step-versions/699d6738-4033-4afc-b6f3-1d82a80e0b41/

File Format

bed

Content Type

peaks

Aliases

ansuman-satpathy:igvf12_peaks_10x5

md5sum

b83f2a4d1e2d451e1f070f4b20bffbf6

Content MD5sum

1fa839c47355cbf36145e0faae6862e4

File Size

1.3 MB

Submitted File Name

/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf12/e12l5_peaks.bed

Checkfiles Version

v14

Validation Error Detail

{"md5sum": "original md5sum 1fa839c47355cbf36145e0faae6862e4 does not match newly calculated md5sum b83f2a4d1e2d451e1f070f4b20bffbf6.", "validate_files": "Error [file=/home/ubuntu/igvf-restricted-files/2025/01/28/35e367d7-963a-4385-953e-5da764e64c8c/IGVFFI3401NJFV.bed.gz, line=152845]: chrom KI270728.1 not found [KI270728.1\t232280\t233174]\nAborting ... found error."}

Reference Source Details

Genome Assembly

GRCh38

File Format Specifications

1 item

Page

Description

Type

Download

Preview

10X Genomics Peaks Bedfile

file format specification

header_peak_set_scATAC_mEB_d21_mm39_20241120.tsv

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1640UGWP

MultiplexedSample

B cell, bone marrow

multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples