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IGVFFI3183CEXF

released
validated
File Set
IGVFDS0872LUHP(HiCAR: bin paired count, differential chromatin contact quantifications)
Summary
GRCm39 differential chromatin contact quantifications
Analysis Step Version
/analysis-step-versions/0622140a-5e26-4deb-a308-89561ca11e22/
File Format
csv
Content Type
differential chromatin contact quantifications
Aliases
charles-gersbach:tabular-file-crispra-HL1-region3-DEanalysis
md5sum
8cd5a9b4e032c112b4f3fc040422d7c0
Content MD5sum
04e56836740cb8060f1f0471b34828e5
File Size
6.8 KB
Submitted File Name
/hpc/group/gersbachlab/tda17/IGVF_data_files/HiCAR/output/Count_matrix_and_DESeq2/HL1_Region3_active_vs_nontarget_ctrl_Union_10kb_DE_results.csv.gz

Reference Source Details

Genome Assembly
GRCm39

File Format Specifications

Samples

6 items
Sample Terms
Summary
InVitroSystem
HL-1 cell line, female, Mus musculus C57BL/6J transfected with a guide library
InVitroSystem
HL-1 cell line, female, Mus musculus C57BL/6J transfected with a guide library
InVitroSystem
HL-1 cell line, female, Mus musculus C57BL/6J transfected with a guide library
InVitroSystem
HL-1 cell line, female, Mus musculus C57BL/6J transfected with a guide library
InVitroSystem
HL-1 cell line, female, Mus musculus C57BL/6J transfected with a guide library
InVitroSystem
HL-1 cell line, female, Mus musculus C57BL/6J transfected with a guide library

Files This File Derives From

1 item
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
tsv
bin paired count
Charles Gersbach, Duke
2.1 KB
validated

Attribution

Award
HG012053
Principal Investigator(s)
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke