IGVFFI3167QVNF

1{
2    "@context": "/terms/",
3    "@id": "/tabular-files/IGVFFI3167QVNF/",
4    "@type": [
5        "TabularFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI3167QVNF",
10    "analysis_step_version": "/analysis-step-versions/c3ad4525-87d0-4d22-9410-f3e616d7cb9c/",
11    "assay_titles": [
12        "lentiMPRA"
13    ],
14    "assembly": "hg19",
15    "audit": {},
16    "award": {
17        "@id": "/awards/HG011966/",
18        "component": "functional characterization"
19    },
20    "barcode_map_for": [],
21    "content_md5sum": "bf992120c0428b25f603bb9ee89f417a",
22    "content_type": "reporter experiment",
23    "controlled_access": false,
24    "creation_timestamp": "2024-11-27T13:10:45.314240+00:00",
25    "derived_from": [
26        "/tabular-files/IGVFFI0922GLFQ/",
27        "/sequence-files/IGVFFI2104GOOJ/",
28        "/sequence-files/IGVFFI1100CEBW/",
29        "/sequence-files/IGVFFI5314QYSA/",
30        "/sequence-files/IGVFFI3330ABCC/",
31        "/sequence-files/IGVFFI7434RLXA/",
32        "/sequence-files/IGVFFI4253JNUG/",
33        "/sequence-files/IGVFFI8327DUVA/",
34        "/sequence-files/IGVFFI5528FTRW/",
35        "/sequence-files/IGVFFI0852UCYT/",
36        "/sequence-files/IGVFFI7520JNOX/",
37        "/sequence-files/IGVFFI9175EUYL/",
38        "/sequence-files/IGVFFI8506ZTML/",
39        "/sequence-files/IGVFFI1826XYXN/",
40        "/sequence-files/IGVFFI9143OBKT/",
41        "/sequence-files/IGVFFI9284SYXM/",
42        "/sequence-files/IGVFFI8179RWIF/",
43        "/sequence-files/IGVFFI3029BTOF/",
44        "/sequence-files/IGVFFI3151ROZD/"
45    ],
46    "file_format": "tsv",
47    "file_format_specifications": [
48        "/documents/eb0e09b3-8151-4a5d-bdde-b7b2b47cf4f6/"
49    ],
50    "file_set": {
51        "@id": "/analysis-sets/IGVFDS2165KBMD/",
52        "@type": [
53            "AnalysisSet",
54            "FileSet",
55            "Item"
56        ],
57        "accession": "IGVFDS2165KBMD",
58        "file_set_type": "principal analysis",
59        "samples": [
60            {
61                "@id": "/in-vitro-systems/IGVFSM0720XHJA/",
62                "@type": [
63                    "InVitroSystem",
64                    "Biosample",
65                    "Sample",
66                    "Item"
67                ],
68                "accession": "IGVFSM0720XHJA",
69                "classifications": [
70                    "differentiated cell specimen",
71                    "pooled cell specimen"
72                ],
73                "sample_terms": [
74                    {
75                        "@id": "/sample-terms/EFO_0003042/",
76                        "status": "released",
77                        "term_name": "H1-hESC"
78                    }
79                ],
80                "status": "released",
81                "summary": "Homo sapiens (male) H1-hESC pooled differentiated cell specimen induced to glutamatergic neuron for 7 days transduced (lentivirus) with a reporter library",
82                "targeted_sample_term": {
83                    "@id": "/sample-terms/CL_0000679/",
84                    "status": "released",
85                    "term_name": "glutamatergic neuron"
86                },
87                "taxa": "Homo sapiens"
88            }
89        ],
90        "status": "released",
91        "summary": "lentiMPRA: reporter experiment, reporter experiment barcode"
92    },
93    "file_size": 553467,
94    "gene_list_for": [],
95    "href": "/tabular-files/IGVFFI3167QVNF/@@download/IGVFFI3167QVNF.tsv.gz",
96    "input_file_for": [],
97    "integrated_in": [],
98    "lab": {
99        "@id": "/labs/nadav-ahituv/",
100        "title": "Nadav Ahituv, UCSF"
101    },
102    "loci_list_for": [],
103    "md5sum": "471b4f6d6d18bc2025a8ecee86b95500",
104    "quality_metrics": [
105        "/mpra-quality-metrics/f65d8984-3a3f-47e6-8f1c-056230061664/"
106    ],
107    "release_timestamp": "2025-01-09T20:34:27.592861+00:00",
108    "s3_uri": "s3://igvf-files/2024/11/27/8a95a085-e257-4e7f-bb43-a2d29821fca1/IGVFFI3167QVNF.tsv.gz",
109    "schema_version": "15",
110    "status": "released",
111    "submitted_by": {
112        "@id": "/users/3ad3479d-753b-4293-9c09-c0dcabfd0ddb/",
113        "title": "Max Schubach"
114    },
115    "submitted_file_name": "\"/data/cephfs-2/unmirrored/groups/kircher/IGVF_data_submssion_TM/ASD_nadav/mprasnakeflow/results/experiment/reporter_experiment.oligo.neurons.defaultAssignment.default.all.tsv.gz\"",
116    "summary": "hg19 reporter experiment",
117    "upload_status": "validated",
118    "uuid": "8a95a085-e257-4e7f-bb43-a2d29821fca1",
119    "workflow": {
120        "@id": "/workflows/IGVFWF6032PEGT/",
121        "name": "MPRAsnakeflow",
122        "uniform_pipeline": true
123    }
124}