IGVFFI3120NHVD

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/tabular-files/IGVFFI3120NHVD/",
4    "@type": [
5        "TabularFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI3120NHVD",
10    "aliases": [
11        "tim-reddy:starr-seq-bird-output-file-P016"
12    ],
13    "analysis_step_version": "/analysis-step-versions/122238ae-e8eb-4836-95a7-299926412e1d/",
14    "assay_titles": [
15        "STARR-seq"
16    ],
17    "assembly": "GRCh38",
18    "audit": {},
19    "award": {
20        "@id": "/awards/HG011967/",
21        "component": "predictive modeling"
22    },
23    "barcode_map_for": [],
24    "checkfiles_version": "v14",
25    "content_md5sum": "10d6e48403bd33f4508676ed60784082",
26    "content_type": "reporter genomic variant effects",
27    "controlled_access": false,
28    "creation_timestamp": "2025-02-07T17:22:51.547143+00:00",
29    "derived_from": [
30        "/tabular-files/IGVFFI4661JKOA/"
31    ],
32    "file_format": "tsv",
33    "file_format_specifications": [
34        "/documents/90f3e124-10d5-462c-8d54-981faf391595/"
35    ],
36    "file_set": {
37        "@id": "/analysis-sets/IGVFDS6219XNKZ/",
38        "@type": [
39            "AnalysisSet",
40            "FileSet",
41            "Item"
42        ],
43        "accession": "IGVFDS6219XNKZ",
44        "file_set_type": "principal analysis",
45        "samples": [
46            {
47                "@id": "/in-vitro-systems/IGVFSM8103VLQU/",
48                "@type": [
49                    "InVitroSystem",
50                    "Biosample",
51                    "Sample",
52                    "Item"
53                ],
54                "accession": "IGVFSM8103VLQU",
55                "classifications": [
56                    "cell line"
57                ],
58                "sample_terms": [
59                    {
60                        "@id": "/sample-terms/EFO_0002067/",
61                        "status": "released",
62                        "term_name": "K562"
63                    }
64                ],
65                "status": "released",
66                "summary": "Homo sapiens (female) K562 cell line transfected with a reporter library",
67                "taxa": "Homo sapiens"
68            }
69        ],
70        "status": "released",
71        "summary": "STARR-seq: alignments, index, reporter genomic variant effects, reporter variants"
72    },
73    "file_size": 46706570,
74    "gene_list_for": [],
75    "href": "/tabular-files/IGVFFI3120NHVD/@@download/IGVFFI3120NHVD.tsv.gz",
76    "input_file_for": [
77        "/tabular-files/IGVFFI5113EDFC/"
78    ],
79    "integrated_in": [],
80    "lab": {
81        "@id": "/labs/bill-majoros/",
82        "title": "Bill Majoros, Duke"
83    },
84    "loci_list_for": [],
85    "md5sum": "722acfa50f47e846db9f4c22eb15d044",
86    "primer_design_for": [],
87    "quality_metrics": [],
88    "release_timestamp": "2025-04-09T16:39:51.525341+00:00",
89    "s3_uri": "s3://igvf-files/2025/02/07/f2e59758-812a-43ff-a4b7-ab20dbf25126/IGVFFI3120NHVD.tsv.gz",
90    "schema_version": "15",
91    "status": "released",
92    "submitted_by": {
93        "@id": "/users/29f5f78d-ac90-421e-90c6-a90e1dc407a7/",
94        "title": "Alejandro Barrera"
95    },
96    "submitted_file_name": "/data/reddylab/Alex/IGVF/data_submissions/processed_data/AIM_1_STARR_seq/K562.starrseq.bird_output.spdi.pool16.txt.gz",
97    "summary": "GRCh38 reporter genomic variant effects",
98    "upload_status": "validated",
99    "uuid": "f2e59758-812a-43ff-a4b7-ab20dbf25126",
100    "workflow": {
101        "@id": "/workflows/IGVFWF6957ZNII/",
102        "name": "SUPERSTARR Pipeline",
103        "uniform_pipeline": false
104    }
105}