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IGVFFI2985TFWZ

released
validated
File Set
IGVFDS7801YPEU(scATAC-seq: fragments, peaks, signal, sparse peak count matrix)
Summary
fragments
Analysis Step Version
/analysis-step-versions/f24bbbaf-4b85-4f27-bc11-d6527da766e2/
File Format
tsv
Content Type
fragments
Aliases
jay-shendure:tabularfile_CREs_scATAC_FragmentFile_2b_LaLanne
md5sum
cd484aa9475f180fa2a652328a09fad4
Content MD5sum
8bf8ceb4750cb4326c15456a14d91c10
File Size
1.6 GB
Submitted File Name
/net/shendure/vol8/projects/JBL/GEO_scATAC_EB_correction_nobackup/bigwigs/fragments_2b_mm39.tsv.gz

File Format Specifications

Samples

4 items
Sample Terms
Summary
InVitroSystem
mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10XlaneB), male, Mus musculus WD44
InVitroSystem
mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10XlaneB), male, Mus musculus WD44
InVitroSystem
mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10XlaneA), male, Mus musculus WD44
InVitroSystem
mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10XlaneA), male, Mus musculus WD44

Files This File Derives From

8 items
fastq
reads
Jay Shendure, UW
3.5 GB
validated
fastq
reads
Jay Shendure, UW
782 MB
validated
fastq
reads
Jay Shendure, UW
1.9 GB
validated
fastq
reads
Jay Shendure, UW
3.6 GB
validated
fastq
reads
Jay Shendure, UW
828 MB
validated
fastq
reads
Jay Shendure, UW
1.7 GB
validated
fastq
reads
Jay Shendure, UW
3.7 GB
validated
fastq
reads
Jay Shendure, UW
3.4 GB
validated

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
peaks
GRCm39 peaks
Jay Shendure, UW
2.7 MB
validated

Attribution

Award
HG011966
Principal Investigator(s)
Contact P.I.
Jay Shendure
Lab
Jay Shendure, UW