IGVFFI2917WVFX

1{
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9    "accession": "IGVFFI2917WVFX",
10    "aliases": [
11        "ansuman-satpathy:igvf9_multiseq_count_matrix_10x1"
12    ],
13    "analysis_step_version": "/analysis-step-versions/49020a48-9224-4d9c-8d55-2264aaf17a1f/",
14    "assay_titles": [
15        "10x multiome with MULTI-seq"
16    ],
17    "audit": {
18        "INTERNAL_ACTION": [
19            {
20                "category": "mismatched status",
21                "detail": "Released tabular file [IGVFFI2917WVFX](/tabular-files/IGVFFI2917WVFX/) has deleted subobject sequence file [IGVFFI1484DRLY](/sequence-files/IGVFFI1484DRLY/).",
22                "level": 30,
23                "level_name": "INTERNAL_ACTION",
24                "name": "audit_item_status",
25                "path": "/tabular-files/IGVFFI2917WVFX/"
26            },
27            {
28                "category": "mismatched status",
29                "detail": "Released tabular file [IGVFFI2917WVFX](/tabular-files/IGVFFI2917WVFX/) has deleted subobject sequence file [IGVFFI8831LTGF](/sequence-files/IGVFFI8831LTGF/).",
30                "level": 30,
31                "level_name": "INTERNAL_ACTION",
32                "name": "audit_item_status",
33                "path": "/tabular-files/IGVFFI2917WVFX/"
34            },
35            {
36                "category": "mismatched status",
37                "detail": "Released tabular file [IGVFFI2917WVFX](/tabular-files/IGVFFI2917WVFX/) has deleted subobject sequence file [IGVFFI4816CJMR](/sequence-files/IGVFFI4816CJMR/).",
38                "level": 30,
39                "level_name": "INTERNAL_ACTION",
40                "name": "audit_item_status",
41                "path": "/tabular-files/IGVFFI2917WVFX/"
42            },
43            {
44                "category": "mismatched status",
45                "detail": "Released tabular file [IGVFFI2917WVFX](/tabular-files/IGVFFI2917WVFX/) has deleted subobject sequence file [IGVFFI5245DADY](/sequence-files/IGVFFI5245DADY/).",
46                "level": 30,
47                "level_name": "INTERNAL_ACTION",
48                "name": "audit_item_status",
49                "path": "/tabular-files/IGVFFI2917WVFX/"
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52    },
53    "award": {
54        "@id": "/awards/HG011972/",
55        "component": "functional characterization"
56    },
57    "barcode_map_for": [],
58    "checkfiles_version": "v16",
59    "content_md5sum": "5278617d76a3e0912969507dd7146bae",
60    "content_type": "cell hashing barcodes",
61    "controlled_access": false,
62    "creation_timestamp": "2025-02-19T23:31:56.709513+00:00",
63    "derived_from": [
64        "/sequence-files/IGVFFI5281NYEA/",
65        "/sequence-files/IGVFFI4424OKOK/",
66        "/sequence-files/IGVFFI8474XMDU/",
67        "/sequence-files/IGVFFI3106OQTD/",
68        "/sequence-files/IGVFFI2433CITY/",
69        "/sequence-files/IGVFFI9730JODC/",
70        "/sequence-files/IGVFFI0820WMVY/",
71        "/sequence-files/IGVFFI0995PBLZ/",
72        "/sequence-files/IGVFFI4816CJMR/",
73        "/sequence-files/IGVFFI5245DADY/",
74        "/sequence-files/IGVFFI1484DRLY/",
75        "/sequence-files/IGVFFI8831LTGF/"
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87        ],
88        "accession": "IGVFDS7527QIIX",
89        "file_set_type": "intermediate analysis",
90        "samples": [
91            {
92                "@id": "/multiplexed-samples/IGVFSM9678IFHW/",
93                "@type": [
94                    "MultiplexedSample",
95                    "Sample",
96                    "Item"
97                ],
98                "accession": "IGVFSM9678IFHW",
99                "classifications": [
100                    "differentiated cell specimen",
101                    "multiplexed sample"
102                ],
103                "disease_terms": [],
104                "modifications": [],
105                "sample_terms": [
106                    {
107                        "@id": "/sample-terms/CL_0000236/",
108                        "status": "released",
109                        "term_name": "B cell"
110                    }
111                ],
112                "status": "released",
113                "summary": "multiplexed sample: Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 1 day; Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 5 days; ... and 5 more samples",
114                "taxa": "Homo sapiens",
115                "treatments": []
116            }
117        ],
118        "status": "released",
119        "summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
120    },
121    "file_size": 779635,
122    "gene_list_for": [],
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124    "input_file_for": [],
125    "integrated_in": [],
126    "lab": {
127        "@id": "/labs/ansuman-satpathy/",
128        "title": "Ansuman Satpathy, Stanford"
129    },
130    "loci_list_for": [],
131    "md5sum": "3f6874dbd9314480fbe5ad2f88ac859a",
132    "quality_metrics": [],
133    "release_timestamp": "2025-03-22T00:41:39.809623+00:00",
134    "s3_uri": "s3://igvf-files/2025/02/19/149d37d6-ff31-47d2-9d0f-3b97526f8c3f/IGVFFI2917WVFX.tsv.gz",
135    "schema_version": "15",
136    "status": "released",
137    "submitted_by": {
138        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
139        "title": "Christopher Mcginnis"
140    },
141    "submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/multi_tsvs/e9l1_tag_mtx.tsv.gz",
142    "summary": "cell hashing barcodes",
143    "upload_status": "validated",
144    "uuid": "149d37d6-ff31-47d2-9d0f-3b97526f8c3f",
145    "workflow": {
146        "@id": "/workflows/IGVFWF1453HVEC/",
147        "name": "Satpathy Cell Ranger",
148        "uniform_pipeline": false
149    }
150}