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IGVFFI2756VSPS

released
validation exempted
File Set
IGVFDS4963SRAJ(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)
Summary
GRCh38 peaks
Analysis Step Version
/analysis-step-versions/699d6738-4033-4afc-b6f3-1d82a80e0b41/
File Format
bed
Content Type
peaks
Aliases
ansuman-satpathy:igvf18_peaks_10x4
md5sum
2c9755a50f9666c1d27d9b96a1f2e8c2
Content MD5sum
0a221f2c175b37b68bb4ecb629718bda
File Size
1.4 MB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf18/e18l4_peaks.bed
Checkfiles Version
v14
Validation Error Detail
{"md5sum": "original md5sum 0a221f2c175b37b68bb4ecb629718bda does not match newly calculated md5sum 2c9755a50f9666c1d27d9b96a1f2e8c2.", "validate_files": "Error [file=/home/ubuntu/igvf-files/2025/01/28/6d651f57-3e3f-4ac1-854c-69d6113cb3d8/IGVFFI2756VSPS.bed.gz, line=174473]: chrom KI270728.1 not found [KI270728.1\t232283\t233178]\nAborting ... found error."}

Reference Source Details

Genome Assembly
GRCh38

File Format Specifications

Samples

4 items
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: IMR-90 cell line, female, Homo sapiens; MCF-7 cell line, female, Homo sapiens; ... and 17 more samples
MultiplexedSample
multiplexed sample: IMR-90 cell line, female, Homo sapiens; MCF-7 cell line, female, Homo sapiens; ... and 17 more samples
MultiplexedSample
multiplexed sample: IMR-90 cell line, female, Homo sapiens; MCF-7 cell line, female, Homo sapiens; ... and 17 more samples
MultiplexedSample
multiplexed sample: IMR-90 cell line, female, Homo sapiens; MCF-7 cell line, female, Homo sapiens; ... and 17 more samples

Files This File Derives From

1 item
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
tsv
fragments
Ansuman Satpathy, Stanford
5.6 GB
validation exempted

Attribution

Award
HG011972
Principal Investigator(s)
Contact P.I.
Jesse Engreitz
Lab
Ansuman Satpathy, Stanford