IGVFFI2578BIPG

released
validation exempted
File Set
IGVFDS8136ENRY(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)
Summary
fragments
Analysis Step Version
File Format
tsv
Content Type
fragments
Aliases
ansuman-satpathy:igvf11_fragments_10x3
md5sum
b9602d94e86bb2de9f6c05d97fea0524
Content MD5sum
b70bd9aadf31f7d1e583b8426591196a
File Size
4.5 GB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf11/e11l3_fragments.tsv.gz
Checkfiles Version
Validation Error Detail
{"tabular_file_error": {"schema": null, "error_number_limit": 1000, "number_of_errors": 1000, "extra-cell": {"count": 1000, "description": "This row has more values compared to the header row (the first row in the data source). A key concept is that all the rows in tabular data must have the same number of columns.", "details": [{"row_number": 52, "field_number": 2, "note": ""}, {"row_number": 52, "field_number": 3, "note": ""}]}, "error_types": ["extra-cell"]}}

File Format Specifications

Samples

4 items
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: H7-hESC differentiated cell specimen, female, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 6 days, male, Homo sapiens; ... and 10 more samples
MultiplexedSample
multiplexed sample: H7-hESC differentiated cell specimen, female, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 6 days, male, Homo sapiens; ... and 10 more samples
MultiplexedSample
multiplexed sample: H7-hESC differentiated cell specimen, female, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 6 days, male, Homo sapiens; ... and 10 more samples
MultiplexedSample
multiplexed sample: H7-hESC differentiated cell specimen, female, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 6 days, male, Homo sapiens; ... and 10 more samples

Files This File Derives From

16 items
fastq
reads
Ansuman Satpathy, Stanford
8.0 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
6.2 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
2.4 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
6.4 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
12 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
1.8 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
7.9 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
4.3 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
4.3 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
11 GB
validated

Files Derived From This File

2 items
tbi
index
index of IGVFFI2578BIPG
Ansuman Satpathy, Stanford
1.6 MB
validated
bed
peaks
GRCh38 peaks
Ansuman Satpathy, Stanford
2.0 MB
validation exempted

Attribution