IGVFFI2489BLJI

revoked
validated
1{
2    "@context": "/terms/",
3    "@id": "/tabular-files/IGVFFI2489BLJI/",
4    "@type": [
5        "TabularFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI2489BLJI",
10    "aliases": [
11        "charles-gersbach:cd8-tcells-perturb-seq-grnas-metadata-v3"
12    ],
13    "assay_titles": [],
14    "assembly": "GRCh38",
15    "audit": {
16        "NOT_COMPLIANT": [
17            {
18                "category": "missing file format specifications",
19                "detail": "Tabular file [IGVFFI2489BLJI](/tabular-files/IGVFFI2489BLJI/) has no `file_format_specifications`. Tabular files, with the exception of vcf files, are expected to link to a file format specifications document describing the headers of the file.",
20                "level": 50,
21                "level_name": "NOT_COMPLIANT",
22                "name": "audit_file_no_file_format_specifications",
23                "path": "/tabular-files/IGVFFI2489BLJI/"
24            }
25        ]
26    },
27    "award": {
28        "@id": "/awards/HG012053/",
29        "component": "functional characterization"
30    },
31    "barcode_map_for": [],
32    "checkfiles_version": "v14",
33    "content_md5sum": "1ff488f54045276af0aa8d4eac858139",
34    "content_type": "guide RNA sequences",
35    "controlled_access": false,
36    "creation_timestamp": "2024-11-01T19:41:41.378701+00:00",
37    "derived_manually": false,
38    "file_format": "tsv",
39    "file_set": {
40        "@id": "/curated-sets/IGVFDS4729GLXH/",
41        "@type": [
42            "CuratedSet",
43            "FileSet",
44            "Item"
45        ],
46        "accession": "IGVFDS4729GLXH",
47        "file_set_type": "guide RNAs",
48        "status": "released",
49        "summary": "Homo sapiens GRCh38 guide RNAs",
50        "taxa": "Homo sapiens"
51    },
52    "file_size": 1520,
53    "gene_list_for": [],
54    "href": "/tabular-files/IGVFFI2489BLJI/@@download/IGVFFI2489BLJI.tsv.gz",
55    "input_file_for": [],
56    "integrated_in": [],
57    "lab": {
58        "@id": "/labs/charles-gersbach/",
59        "title": "Charles Gersbach, Duke"
60    },
61    "loci_list_for": [],
62    "md5sum": "e956acb4ddf7099d045a250e7de46170",
63    "primer_design_for": [],
64    "quality_metrics": [],
65    "release_timestamp": "2025-02-05T21:28:01.439990+00:00",
66    "revoke_detail": "There is an updated version of this file: IGVFFI8014HBJR with ensembl IDs and new column names.",
67    "s3_uri": "s3://igvf-files/2024/11/01/2ecf145e-5328-41a9-8d27-86584813fca6/IGVFFI2489BLJI.tsv.gz",
68    "schema_version": "16",
69    "status": "revoked",
70    "submitted_by": {
71        "@id": "/users/29f5f78d-ac90-421e-90c6-a90e1dc407a7/",
72        "title": "Alejandro Barrera"
73    },
74    "submitted_file_name": "/data/reddylab/Alex/IGVF/data_submissions/reference_data/AIM_2_T_cell_project_1/TF_CRISPR_i_a.scRNAseq_screen.igvf_metadata.v3.txt.gz",
75    "summary": "GRCh38 guide RNA sequences",
76    "upload_status": "validated",
77    "uuid": "2ecf145e-5328-41a9-8d27-86584813fca6"
78}