IGVFFI2463QNJD

revoked
validated
1{
2    "@context": "/terms/",
3    "@id": "/tabular-files/IGVFFI2463QNJD/",
4    "@type": [
5        "TabularFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI2463QNJD",
10    "aliases": [
11        "jay-shendure:tabularfile_CRISPRa_guidefile_updated_Chardon-McDiarmid"
12    ],
13    "assay_titles": [],
14    "assembly": "GRCh38",
15    "audit": {},
16    "award": {
17        "@id": "/awards/HG011966/",
18        "component": "functional characterization"
19    },
20    "barcode_map_for": [],
21    "content_md5sum": "4e89c3f2c3782791a3cd37e90f4b8b05",
22    "content_type": "guide RNA sequences",
23    "controlled_access": false,
24    "creation_timestamp": "2024-12-18T01:27:49.328214+00:00",
25    "derived_manually": false,
26    "file_format": "tsv",
27    "file_format_specifications": [
28        {
29            "@id": "/documents/78670549-3719-42bc-8df2-92d98918fa27/",
30            "description": "File format specification for per-guide metadata used in a CRISPR experiment",
31            "standardized_file_format": true
32        }
33    ],
34    "file_set": {
35        "@id": "/curated-sets/IGVFDS4406RWDD/",
36        "@type": [
37            "CuratedSet",
38            "FileSet",
39            "Item"
40        ],
41        "accession": "IGVFDS4406RWDD",
42        "file_set_type": "guide RNAs",
43        "status": "released",
44        "summary": "Homo sapiens GRCh38 guide RNAs",
45        "taxa": "Homo sapiens"
46    },
47    "file_size": 11942,
48    "gene_list_for": [],
49    "href": "/tabular-files/IGVFFI2463QNJD/@@download/IGVFFI2463QNJD.tsv.gz",
50    "input_file_for": [],
51    "integrated_in": [],
52    "lab": {
53        "@id": "/labs/jay-shendure/",
54        "title": "Jay Shendure, UW"
55    },
56    "loci_list_for": [
57        "/construct-library-sets/IGVFDS7581DNXF/"
58    ],
59    "md5sum": "7ae4ff54bd3b8bbd1b9fa2530defb032",
60    "notes": "Manually patched to validated since gRNA sequences schema with guide_id is taking too long to implement.",
61    "primer_design_for": [],
62    "quality_metrics": [],
63    "release_timestamp": "2025-01-17T00:43:17.781073+00:00",
64    "revoke_detail": "There is an updated version of this file: IGVFFI1174ARXR with new column names.",
65    "s3_uri": "s3://igvf-files/2024/12/18/c3a99208-aa06-4ab3-8278-24004ef28b4d/IGVFFI2463QNJD.tsv.gz",
66    "schema_version": "16",
67    "status": "revoked",
68    "submitted_by": {
69        "@id": "/users/73f58e9f-8f5d-4fee-a7cd-dd63c0167e4b/",
70        "title": "Beth Martin"
71    },
72    "submitted_file_name": "/net/shendure/vol1/home/martin91/IGVF/forupload/CRISPRa/241119_Chardon_McDiarmid_etal_IGVF_gRNAs.tsv.gz",
73    "summary": "GRCh38 guide RNA sequences",
74    "upload_status": "validated",
75    "uuid": "c3a99208-aa06-4ab3-8278-24004ef28b4d"
76}