{
"@context": "/terms/",
"@id": "/tabular-files/IGVFFI2463QNJD/",
"@type": [
"TabularFile",
"File",
"Item"
],
"accession": "IGVFFI2463QNJD",
"aliases": [
"jay-shendure:tabularfile_CRISPRa_guidefile_updated_Chardon-McDiarmid"
],
"assay_titles": [],
"assembly": "GRCh38",
"audit": {
"NOT_COMPLIANT": [
{
"category": "missing file format specifications",
"detail": "Tabular file [IGVFFI2463QNJD](/tabular-files/IGVFFI2463QNJD/) has no `file_format_specifications`. Tabular files are expected to link to a file format specifications document describing the headers of the file.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_file_no_file_format_specifications",
"path": "/tabular-files/IGVFFI2463QNJD/"
}
]
},
"award": {
"@id": "/awards/HG011966/",
"component": "functional characterization"
},
"barcode_map_for": [],
"content_md5sum": "4e89c3f2c3782791a3cd37e90f4b8b05",
"content_type": "guide RNA sequences",
"controlled_access": false,
"creation_timestamp": "2024-12-18T01:27:49.328214+00:00",
"file_format": "tsv",
"file_set": {
"@id": "/curated-sets/IGVFDS4406RWDD/",
"accession": "IGVFDS4406RWDD",
"file_set_type": "guide RNAs",
"status": "released",
"summary": "Homo sapiens GRCh38 guide RNAs",
"taxa": "Homo sapiens"
},
"file_size": 11942,
"gene_list_for": [],
"href": "/tabular-files/IGVFFI2463QNJD/@@download/IGVFFI2463QNJD.tsv.gz",
"input_file_for": [],
"integrated_in": [
{
"@id": "/construct-library-sets/IGVFDS7581DNXF/",
"file_set_type": "guide library",
"status": "released",
"summary": "guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci"
}
],
"lab": {
"@id": "/labs/jay-shendure/",
"title": "Jay Shendure, UW"
},
"loci_list_for": [
"/construct-library-sets/IGVFDS7581DNXF/"
],
"md5sum": "7ae4ff54bd3b8bbd1b9fa2530defb032",
"notes": "Manually patched to validated since gRNA sequences schema with guide_id is taking too long to implement.",
"quality_metrics": [],
"release_timestamp": "2025-01-17T00:43:17.781073+00:00",
"s3_uri": "s3://igvf-files/2024/12/18/c3a99208-aa06-4ab3-8278-24004ef28b4d/IGVFFI2463QNJD.tsv.gz",
"schema_version": "13",
"status": "released",
"submitted_by": {
"@id": "/users/73f58e9f-8f5d-4fee-a7cd-dd63c0167e4b/",
"title": "Beth Martin"
},
"submitted_file_name": "/net/shendure/vol1/home/martin91/IGVF/forupload/CRISPRa/241119_Chardon_McDiarmid_etal_IGVF_gRNAs.tsv.gz",
"summary": "GRCh38 guide RNA sequences",
"upload_status": "validated",
"uuid": "c3a99208-aa06-4ab3-8278-24004ef28b4d"
}