IGVFFI2463QNJD

released
validated
{
    "@context": "/terms/",
    "@id": "/tabular-files/IGVFFI2463QNJD/",
    "@type": [
        "TabularFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI2463QNJD",
    "aliases": [
        "jay-shendure:tabularfile_CRISPRa_guidefile_updated_Chardon-McDiarmid"
    ],
    "assay_titles": [],
    "assembly": "GRCh38",
    "audit": {
        "NOT_COMPLIANT": [
            {
                "category": "missing file format specifications",
                "detail": "Tabular file [IGVFFI2463QNJD](/tabular-files/IGVFFI2463QNJD/) has no `file_format_specifications`. Tabular files are expected to link to a file format specifications document describing the headers of the file.",
                "level": 50,
                "level_name": "NOT_COMPLIANT",
                "name": "audit_file_no_file_format_specifications",
                "path": "/tabular-files/IGVFFI2463QNJD/"
            }
        ]
    },
    "award": {
        "@id": "/awards/HG011966/",
        "component": "functional characterization"
    },
    "barcode_map_for": [],
    "content_md5sum": "4e89c3f2c3782791a3cd37e90f4b8b05",
    "content_type": "guide RNA sequences",
    "controlled_access": false,
    "creation_timestamp": "2024-12-18T01:27:49.328214+00:00",
    "file_format": "tsv",
    "file_set": {
        "@id": "/curated-sets/IGVFDS4406RWDD/",
        "accession": "IGVFDS4406RWDD",
        "file_set_type": "guide RNAs",
        "status": "released",
        "summary": "Homo sapiens GRCh38 guide RNAs",
        "taxa": "Homo sapiens"
    },
    "file_size": 11942,
    "gene_list_for": [],
    "href": "/tabular-files/IGVFFI2463QNJD/@@download/IGVFFI2463QNJD.tsv.gz",
    "input_file_for": [],
    "integrated_in": [
        {
            "@id": "/construct-library-sets/IGVFDS7581DNXF/",
            "file_set_type": "guide library",
            "status": "released",
            "summary": "guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci"
        }
    ],
    "lab": {
        "@id": "/labs/jay-shendure/",
        "title": "Jay Shendure, UW"
    },
    "loci_list_for": [
        "/construct-library-sets/IGVFDS7581DNXF/"
    ],
    "md5sum": "7ae4ff54bd3b8bbd1b9fa2530defb032",
    "notes": "Manually patched to validated since gRNA sequences schema with guide_id is taking too long to implement.",
    "quality_metrics": [],
    "release_timestamp": "2025-01-17T00:43:17.781073+00:00",
    "s3_uri": "s3://igvf-files/2024/12/18/c3a99208-aa06-4ab3-8278-24004ef28b4d/IGVFFI2463QNJD.tsv.gz",
    "schema_version": "13",
    "status": "released",
    "submitted_by": {
        "@id": "/users/73f58e9f-8f5d-4fee-a7cd-dd63c0167e4b/",
        "title": "Beth Martin"
    },
    "submitted_file_name": "/net/shendure/vol1/home/martin91/IGVF/forupload/CRISPRa/241119_Chardon_McDiarmid_etal_IGVF_gRNAs.tsv.gz",
    "summary": "GRCh38 guide RNA sequences",
    "upload_status": "validated",
    "uuid": "c3a99208-aa06-4ab3-8278-24004ef28b4d"
}