{
"@context": "/terms/",
"@id": "/tabular-files/IGVFFI2447ZTHV/",
"@type": [
"TabularFile",
"File",
"Item"
],
"accession": "IGVFFI2447ZTHV",
"aliases": [
"guillaume-lettre:BP_mageck_KRAB_prolif_mapped_counts"
],
"analysis_step_version": "/analysis-step-versions/c0fbe877-fa6c-423b-8d56-e600bf8e2859/",
"assay_titles": [
"Proliferation CRISPR screen"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released tabular file [IGVFFI2447ZTHV](/tabular-files/IGVFFI2447ZTHV/) has in progress subobject sequence file [IGVFFI7751BOEV](/sequence-files/IGVFFI7751BOEV/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tabular-files/IGVFFI2447ZTHV/"
},
{
"category": "mismatched status",
"detail": "Released tabular file [IGVFFI2447ZTHV](/tabular-files/IGVFFI2447ZTHV/) has in progress subobject sequence file [IGVFFI8815XCZM](/sequence-files/IGVFFI8815XCZM/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tabular-files/IGVFFI2447ZTHV/"
},
{
"category": "mismatched status",
"detail": "Released tabular file [IGVFFI2447ZTHV](/tabular-files/IGVFFI2447ZTHV/) has in progress subobject sequence file [IGVFFI3904ETQG](/sequence-files/IGVFFI3904ETQG/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tabular-files/IGVFFI2447ZTHV/"
},
{
"category": "mismatched status",
"detail": "Released tabular file [IGVFFI2447ZTHV](/tabular-files/IGVFFI2447ZTHV/) has in progress subobject sequence file [IGVFFI5610FSCJ](/sequence-files/IGVFFI5610FSCJ/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tabular-files/IGVFFI2447ZTHV/"
},
{
"category": "mismatched status",
"detail": "Released tabular file [IGVFFI2447ZTHV](/tabular-files/IGVFFI2447ZTHV/) has in progress subobject document [a0137923-9bc3-4c2e-a9a6-250156cd1c39](/documents/a0137923-9bc3-4c2e-a9a6-250156cd1c39/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tabular-files/IGVFFI2447ZTHV/"
}
]
},
"award": {
"@id": "/awards/HG012010/",
"component": "functional characterization"
},
"barcode_map_for": [],
"checkfiles_version": "v17",
"content_md5sum": "b2c7e9fad058167a7bd5a29e5cbb4185",
"content_type": "guide quantifications",
"controlled_access": false,
"creation_timestamp": "2025-03-04T21:39:33.622758+00:00",
"derived_from": [
"/sequence-files/IGVFFI5172ZGMS/",
"/sequence-files/IGVFFI0061SZXC/",
"/sequence-files/IGVFFI8402CZON/",
"/sequence-files/IGVFFI4794PEGY/",
"/sequence-files/IGVFFI3484CKZS/",
"/sequence-files/IGVFFI8190YGNW/",
"/sequence-files/IGVFFI5283GLXO/",
"/sequence-files/IGVFFI8582SZNW/",
"/sequence-files/IGVFFI4247ZEKB/",
"/sequence-files/IGVFFI4290WEEC/",
"/sequence-files/IGVFFI6206EOBJ/",
"/sequence-files/IGVFFI9716QKMS/",
"/sequence-files/IGVFFI5572MLDG/",
"/sequence-files/IGVFFI6163GMVE/",
"/sequence-files/IGVFFI4026VSPS/",
"/sequence-files/IGVFFI0960XPFA/",
"/sequence-files/IGVFFI8815XCZM/",
"/sequence-files/IGVFFI3904ETQG/",
"/sequence-files/IGVFFI5610FSCJ/",
"/sequence-files/IGVFFI7751BOEV/"
],
"file_format": "csv",
"file_format_specifications": [
"/documents/a0137923-9bc3-4c2e-a9a6-250156cd1c39/"
],
"file_set": {
"@id": "/analysis-sets/IGVFDS0577SVCR/",
"@type": [
"AnalysisSet",
"FileSet",
"Item"
],
"accession": "IGVFDS0577SVCR",
"file_set_type": "principal analysis",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM7723IFNO/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7723IFNO",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
"modality": "interference",
"status": "in progress",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "Homo sapiens (female) TeloHAEC cell line modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM2781WWEL/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2781WWEL",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
"modality": "interference",
"status": "in progress",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "Homo sapiens (female) TeloHAEC cell line modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM5527CZJP/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5527CZJP",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
"modality": "interference",
"status": "in progress",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "Homo sapiens (female) TeloHAEC cell line modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM2194MQPY/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2194MQPY",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
"modality": "interference",
"status": "in progress",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "Homo sapiens (female) TeloHAEC cell line modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM6676TYOJ/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6676TYOJ",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
"modality": "interference",
"status": "in progress",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "Homo sapiens (female) TeloHAEC cell line modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM6947JXBN/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6947JXBN",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
"modality": "interference",
"status": "in progress",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "Homo sapiens (female) TeloHAEC cell line modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM9748THRG/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9748THRG",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
"modality": "interference",
"status": "in progress",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "Homo sapiens (female) TeloHAEC cell line modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM1983GROH/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1983GROH",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/dca41650-4b6d-4685-b9c0-6c003f2d872a/",
"modality": "interference",
"status": "in progress",
"summary": "CRISPRi Sp-dCas9-KOX1-KRAB"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "Homo sapiens (female) TeloHAEC cell line modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
}
],
"status": "released",
"summary": "Proliferation CRISPR interference screen: guide quantifications"
},
"file_size": 149239,
"gene_list_for": [],
"href": "/tabular-files/IGVFFI2447ZTHV/@@download/IGVFFI2447ZTHV.csv.gz",
"input_file_for": [
"/tabular-files/IGVFFI9153BTJA/"
],
"integrated_in": [],
"lab": {
"@id": "/labs/guillaume-lettre/",
"title": "Guillaume Lettre, MHI"
},
"loci_list_for": [],
"md5sum": "2638636b63f1d15d301e735da7b83ccc",
"primer_design_for": [],
"quality_metrics": [],
"release_timestamp": "2025-03-07T23:06:27.315472+00:00",
"s3_uri": "s3://igvf-files/2025/03/04/6fd69f2c-91c9-4534-9b62-d466fb57de90/IGVFFI2447ZTHV.csv.gz",
"schema_version": "15",
"status": "released",
"submitted_by": {
"@id": "/users/005a9a1c-02ab-408f-90a9-d6bea5c36d05/",
"title": "Ken Sin Lo"
},
"submitted_file_name": "/home/lokensin/projects/rrg-glettre/lokensin/IGVF/Submission_DACC_20250304/BP_Pilot_KRAB_prolif_Mageck_count.txt.gz",
"summary": "guide quantifications",
"upload_status": "validated",
"uuid": "6fd69f2c-91c9-4534-9b62-d466fb57de90",
"workflow": {
"@id": "/workflows/IGVFWF7224ABWD/",
"name": "MAGeCK CRISPR screen workflow",
"uniform_pipeline": false
}
}