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IGVFFI2325NRPY

preview
validated
This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS5056OAGR(CRISPR prime editing Variant-EFFECTS targeting PPIF integrating a guide (sgRNA) library targeting sequence variants in a genomic locus with unsorted FACS input, untransfected controls)
Summary
hg19 variant effects
Analysis Step Version
/analysis-step-versions/b1581dec-2980-4a2e-8884-4e95219da4d4/
File Format
tsv
Content Type
variant effects
Aliases
jesse-engreitz:PPIF_promoter_8mer_insertion_THP1_Variant-FlowFISH_variant_effects_file
md5sum
1cee5b8fcf39968a4bf8a920ff0e68db
Content MD5sum
0d5ebe32884d5f3d691cc30bd47a6faf
File Size
2.4 KB
Submitted File Name
PPIF_promoter_8mer_insertion_THP1_AllelicEffectsStats.tsv.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Jesse Engreitz, Stanford

Reference Source Details

Genome Assembly
hg19

File Format Specifications

1 item
Page
Description
Type
Download
Standardized File Format
Preview
explanation of columns in analysis summary file output by the Variant-EFFECTS pipeline
file format specification

Samples

78 items
Sample Terms
Summary
InVitroSystem
Homo sapiens (male) THP-1 cell line (sorting details: FACS bin for 55-65% expression of PPIF) modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) THP-1 cell line (sorting details: FACS bin for 35-45% expression of PPIF) modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) THP-1 cell line modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) THP-1 cell line (sorting details: FACS bin for 55-65% expression of PPIF) modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) THP-1 cell line (sorting details: FACS bin for 35-45% expression of PPIF) modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) THP-1 cell line (sorting details: FACS bin for 55-65% expression of PPIF) modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) THP-1 cell line (sorting details: FACS bin for 35-45% expression of PPIF) modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) THP-1 cell line (sorting details: FACS bin for 55-65% expression of PPIF) modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) THP-1 cell line (sorting details: FACS bin for 35-45% expression of PPIF) modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) THP-1 cell line (sorting details: FACS bin for 80-90% expression of PPIF) modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transduced (lentivirus) with a guide library

Files This File Derives From

624 items
fastq
reads
Jesse Engreitz, Stanford
39 MB
validated
fastq
reads
Jesse Engreitz, Stanford
14 MB
validated
fastq
reads
Jesse Engreitz, Stanford
2.9 MB
validated
fastq
reads
Jesse Engreitz, Stanford
36 MB
validated
fastq
reads
Jesse Engreitz, Stanford
15 MB
validated
fastq
reads
Jesse Engreitz, Stanford
3.0 MB
validated
fastq
reads
Jesse Engreitz, Stanford
7.9 MB
validated
fastq
reads
Jesse Engreitz, Stanford
3.0 MB
validated
fastq
reads
Jesse Engreitz, Stanford
14 MB
validated
fastq
reads
Jesse Engreitz, Stanford
77 MB
validated

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
variant effects
GRCh38 variant effects
Jesse Engreitz, Stanford
2.8 KB
validated