IGVFFI2294VFGH

released

validated

File Set

IGVFDS2248ZJTA(HiCAR: bin paired count, differential chromatin contact quantifications)

Summary

GRCh38 bin paired count

Analysis Step Version

/analysis-step-versions/7a065c7f-9076-4e55-ae0a-8c0ae1b1c13e/

File Format

tsv

Content Type

bin paired count

Aliases

charles-gersbach:tabular-file-crispra-stim-ctrl-NT-count

md5sum

73bf62de66aa8a4f46166d6455f73ab4

Content MD5sum

c04ec2e24c26cddf86277df3ee2dd91d

File Size

1.7 KB

Submitted File Name

/hpc/group/gersbachlab/tda17/IGVF_data_files/HiCAR/output/Count_matrix_and_DESeq2/CRISPRa.stim_vs_ctrl_Union_in_NT_10kb_count_mat_CRISPRi_range_res_10kb.tsv.gz

Checkfiles Version

Legacy version of checkfiles

Reference Source Details

Genome Assembly

GRCh38

File Format Specifications

1 item

Page

Description

Type

Download

Preview

Gene counts table

file format specification

Gene counts table file format specification_HiCAR.pdf

Samples

4 items

Sample Terms

Summary

IGVFSM2698DFOT

InVitroSystem

GM25256 (WTC-11)

GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days, male, Homo sapiens treated with 1 μM Endothelin-1 for 3 days, transfected with a guide library

IGVFSM6234HZRL

InVitroSystem

GM25256 (WTC-11)

GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days, male, Homo sapiens transfected with a guide library

IGVFSM7176NKKR

InVitroSystem

GM25256 (WTC-11)

GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days, male, Homo sapiens treated with 1 μM Endothelin-1 for 3 days, transfected with a guide library

IGVFSM9382KDYU

InVitroSystem

GM25256 (WTC-11)

GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days, male, Homo sapiens transfected with a guide library