IGVFFI2164BNCK

preview
validated
This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS4003HZAB(CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)
Summary
GRCh38 GENCODE 32 unfiltered local differential expression
Analysis Step Version
File Format
csv
Content Type
unfiltered local differential expression
Aliases
gary-hon:CM_Pilot_2_Lenti_RNA_DE_local
md5sum
ba4b511ed4495f6e6064a6fa7fcd7e58
Content MD5sum
559aaa15b34eec4746913f55f7ceba45
File Size
5.7 KB
Submitted File Name
/project/GCRB/Hon_lab/s215194/IGVF/data_submission/reference_files/CM_Pilot_2_Lenti_RNA_DE_local.csv.gz
Checkfiles Version
Attribution

Reference Source Details

Genome Assembly
GRCh38
Transcriptome Annotation
GENCODE 32

File Format Specifications

1 item
Page
Description
Type
Download
Standardized File Format
Preview

Samples

8 items
Sample Terms
Summary
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW262) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW263) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW264) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW261) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW268) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW266) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW267) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW265) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library

Files This File Derives From

2 items
pkl
raw feature barcode matrix
Gary Hon, UT
5.2 GB
validated
hdf5
filtered feature barcode matrix
Gary Hon, UT
443 MB
validated