IGVFFI2066SDOM

released

validation exempted

File Set

IGVFDS5437FJHN(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)

Summary

GRCh38 peaks

Analysis Step Version

/analysis-step-versions/699d6738-4033-4afc-b6f3-1d82a80e0b41/

File Format

bed

Content Type

peaks

Aliases

ansuman-satpathy:igvf12_peaks_10x7

md5sum

4d67dcee938faab81fa5c58e631a1e09

Content MD5sum

51d837c71bd7ce1189c0f3f6f68c7eb3

File Size

1.1 MB

Submitted File Name

/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf12/e12l7_peaks.bed

Checkfiles Version

v14

Validation Error Detail

{"md5sum": "original md5sum 51d837c71bd7ce1189c0f3f6f68c7eb3 does not match newly calculated md5sum 4d67dcee938faab81fa5c58e631a1e09.", "validate_files": "Error [file=/home/ubuntu/igvf-restricted-files/2025/01/28/9c675f0b-36b8-44bd-8fc4-71ccc7ddc50b/IGVFFI2066SDOM.bed.gz, line=129947]: chrom KI270728.1 not found [KI270728.1\t232281\t233178]\nAborting ... found error."}

Reference Source Details

Genome Assembly

GRCh38

File Format Specifications

1 item

Page

Description

Type

Download

Preview

10X Genomics Peaks Bedfile

file format specification

header_peak_set_scATAC_mEB_d21_mm39_20241120.tsv

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6125HAMH

MultiplexedSample

B cell, bone marrow

multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples