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IGVFFI2066SDOM

released
validation exempted
File Set
IGVFDS5437FJHN(single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq): cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)
Summary
GRCh38 peaks
Analysis Step Version
/analysis-step-versions/699d6738-4033-4afc-b6f3-1d82a80e0b41/
File Format
bed
Content Type
peaks
Aliases
ansuman-satpathy:igvf12_peaks_10x7
md5sum
4d67dcee938faab81fa5c58e631a1e09
Content MD5sum
51d837c71bd7ce1189c0f3f6f68c7eb3
File Size
1.1 MB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf12/e12l7_peaks.bed
Checkfiles Version
v14
Validation Error Detail
{"md5sum": "original md5sum 51d837c71bd7ce1189c0f3f6f68c7eb3 does not match newly calculated md5sum 4d67dcee938faab81fa5c58e631a1e09.", "validate_files": "Error [file=/home/ubuntu/igvf-restricted-files/2025/01/28/9c675f0b-36b8-44bd-8fc4-71ccc7ddc50b/IGVFFI2066SDOM.bed.gz, line=129947]: chrom KI270728.1 not found [KI270728.1\t232281\t233178]\nAborting ... found error."}
Attribution
Ansuman Satpathy, Stanford

Reference Source Details

Genome Assembly
GRCh38

File Format Specifications

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples

Files This File Derives From

1 item
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
tsv
fragments
Ansuman Satpathy, Stanford
7.3 GB
validation exempted