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IGVFFI2054HSCC

released
validated
File Set
IGVFDS2248ZJTA(CRISPR HiCAR integrating a non-targeting guide (sgRNA) library)
Summary
GRCh38 differential chromatin contact quantifications
Analysis Step Version
/analysis-step-versions/0622140a-5e26-4deb-a308-89561ca11e22/
File Format
csv
Content Type
differential chromatin contact quantifications
Aliases
charles-gersbach:tabular-file-crispra-stim-ctrl-NT-DEanalysis
md5sum
a6854d798ff4d3f77c5339b02edb36ae
Content MD5sum
ae9ef60aeb81f8d6b2ffd215dc52b43a
File Size
7.5 KB
Submitted File Name
/hpc/group/gersbachlab/tda17/IGVF_data_files/HiCAR/output/Count_matrix_and_DESeq2/CRISPRa.stim_vs_ctrl_Union_in_NT_10kb_DE_results.csv.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Charles Gersbach, Duke

Reference Source Details

Genome Assembly
GRCh38

File Format Specifications

1 item
Page
Description
Type
Download
Standardized File Format
Preview
DESeq2 results
file format specification

Samples

4 items
Sample Terms
Summary
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days treated with 1 μM Endothelin-1 for 3 days, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days treated with 1 μM Endothelin-1 for 3 days, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days transduced (lentivirus) with a guide library

Files This File Derives From

1 item
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
tsv
bin paired count
Charles Gersbach, Duke
1.7 KB
validated