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IGVFFI2054HSCC

released
validated
File Set
IGVFDS2248ZJTA(HiCAR: bin paired count, differential chromatin contact quantifications)
Summary
GRCh38 differential chromatin contact quantifications
Analysis Step Version
/analysis-step-versions/0622140a-5e26-4deb-a308-89561ca11e22/
File Format
csv
Content Type
differential chromatin contact quantifications
Aliases
charles-gersbach:tabular-file-crispra-stim-ctrl-NT-DEanalysis
md5sum
a6854d798ff4d3f77c5339b02edb36ae
Content MD5sum
ae9ef60aeb81f8d6b2ffd215dc52b43a
File Size
7.5 KB
Submitted File Name
/hpc/group/gersbachlab/tda17/IGVF_data_files/HiCAR/output/Count_matrix_and_DESeq2/CRISPRa.stim_vs_ctrl_Union_in_NT_10kb_DE_results.csv.gz

Reference Source Details

Genome Assembly
GRCh38

File Format Specifications

Samples

4 items
Sample Terms
Summary
InVitroSystem
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days, male, Homo sapiens treated with 1 μM Endothelin-1 for 3 days, transfected with a guide library
InVitroSystem
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days, male, Homo sapiens transfected with a guide library
InVitroSystem
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days, male, Homo sapiens treated with 1 μM Endothelin-1 for 3 days, transfected with a guide library
InVitroSystem
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days, male, Homo sapiens transfected with a guide library

Files This File Derives From

1 item
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
tsv
bin paired count
Charles Gersbach, Duke
1.7 KB
validated

Attribution

Award
HG012053
Principal Investigator(s)
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke