IGVFFI1936ETPF

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/tabular-files/IGVFFI1936ETPF/",
4    "@type": [
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9    "accession": "IGVFFI1936ETPF",
10    "aliases": [
11        "ansuman-satpathy:igvf2_multiseq_count_matrix_10x1"
12    ],
13    "analysis_step_version": "/analysis-step-versions/49020a48-9224-4d9c-8d55-2264aaf17a1f/",
14    "assay_titles": [
15        "10x multiome with MULTI-seq"
16    ],
17    "audit": {},
18    "award": {
19        "@id": "/awards/HG011972/",
20        "component": "functional characterization"
21    },
22    "barcode_map_for": [],
23    "checkfiles_version": "v16",
24    "content_md5sum": "aa1ae4fa9423f769290cb54e3c99c3c3",
25    "content_type": "cell hashing barcodes",
26    "controlled_access": false,
27    "creation_timestamp": "2025-02-19T23:30:00.636152+00:00",
28    "derived_from": [
29        "/sequence-files/IGVFFI8462BKYM/",
30        "/sequence-files/IGVFFI0292SYVB/",
31        "/sequence-files/IGVFFI6392OPMO/",
32        "/sequence-files/IGVFFI3666KZJE/",
33        "/sequence-files/IGVFFI8702MWTF/",
34        "/sequence-files/IGVFFI8387TIGP/",
35        "/sequence-files/IGVFFI0210PZLR/",
36        "/sequence-files/IGVFFI9650KYBD/"
37    ],
38    "file_format": "tsv",
39    "file_format_specifications": [
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42    "file_set": {
43        "@id": "/analysis-sets/IGVFDS1583PWNS/",
44        "@type": [
45            "AnalysisSet",
46            "FileSet",
47            "Item"
48        ],
49        "accession": "IGVFDS1583PWNS",
50        "file_set_type": "intermediate analysis",
51        "samples": [
52            {
53                "@id": "/multiplexed-samples/IGVFSM3646QLDO/",
54                "@type": [
55                    "MultiplexedSample",
56                    "Sample",
57                    "Item"
58                ],
59                "accession": "IGVFSM3646QLDO",
60                "classifications": [
61                    "cell line",
62                    "multiplexed sample"
63                ],
64                "disease_terms": [],
65                "modifications": [],
66                "sample_terms": [
67                    {
68                        "@id": "/sample-terms/NTR_0000753/",
69                        "status": "released",
70                        "term_name": "TeloHAEC"
71                    }
72                ],
73                "status": "released",
74                "summary": "multiplexed sample: Homo sapiens (female) TeloHAEC cell line treated with 10 ng/mL tumor necrosis factor alpha for 4 hours; Homo sapiens (female) TeloHAEC cell line; ... and 7 more samples",
75                "taxa": "Homo sapiens",
76                "treatments": [
77                    {
78                        "@id": "/treatments/d2d49540-dd91-49e2-b877-ce9aa0af8bb0/",
79                        "purpose": "perturbation",
80                        "status": "in progress",
81                        "summary": "Treatment of 10 ng/mL tumor necrosis factor alpha for 4 hours",
82                        "treatment_term_name": "tumor necrosis factor alpha"
83                    },
84                    {
85                        "@id": "/treatments/de8a9e87-d0e1-4ecb-bc9d-08e61b4ff368/",
86                        "purpose": "perturbation",
87                        "status": "in progress",
88                        "summary": "Treatment of 10 ng/mL tumor necrosis factor alpha for 1 day",
89                        "treatment_term_name": "tumor necrosis factor alpha"
90                    }
91                ]
92            }
93        ],
94        "status": "released",
95        "summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
96    },
97    "file_size": 604503,
98    "gene_list_for": [],
99    "href": "/tabular-files/IGVFFI1936ETPF/@@download/IGVFFI1936ETPF.tsv.gz",
100    "input_file_for": [],
101    "integrated_in": [],
102    "lab": {
103        "@id": "/labs/ansuman-satpathy/",
104        "title": "Ansuman Satpathy, Stanford"
105    },
106    "loci_list_for": [],
107    "md5sum": "92aee4c421e4d21fb4ef6dc253c29d62",
108    "quality_metrics": [],
109    "release_timestamp": "2025-03-07T06:04:10.737301+00:00",
110    "s3_uri": "s3://igvf-files/2025/02/19/b5fafcc8-e31d-471d-97cf-78c106422998/IGVFFI1936ETPF.tsv.gz",
111    "schema_version": "15",
112    "status": "released",
113    "submitted_by": {
114        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
115        "title": "Christopher Mcginnis"
116    },
117    "submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/multi_tsvs/e2l1_tag_mtx.tsv.gz",
118    "summary": "cell hashing barcodes",
119    "upload_status": "validated",
120    "uuid": "b5fafcc8-e31d-471d-97cf-78c106422998",
121    "workflow": {
122        "@id": "/workflows/IGVFWF1453HVEC/",
123        "name": "Satpathy Cell Ranger",
124        "uniform_pipeline": false
125    }
126}