IGVFFI1928OJPU

released

validation exempted

File Set

IGVFDS0793KZKS(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)

Summary

GRCh38 peaks

Analysis Step Version

/analysis-step-versions/699d6738-4033-4afc-b6f3-1d82a80e0b41/

File Format

bed

Content Type

peaks

Aliases

ansuman-satpathy:igvf12_peaks_10x1

md5sum

d1e3f33fbc84ea1777ff2c37b21059a7

Content MD5sum

313226ad2305cd44deb3697abb262db1

File Size

1.2 MB

Submitted File Name

/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf12/e12l1_peaks.bed

Checkfiles Version

v14

Validation Error Detail

{"md5sum": "original md5sum 313226ad2305cd44deb3697abb262db1 does not match newly calculated md5sum d1e3f33fbc84ea1777ff2c37b21059a7.", "validate_files": "Error [file=/home/ubuntu/igvf-restricted-files/2025/01/28/03f0b3cb-9b12-4c73-b97d-e213da3a1a57/IGVFFI1928OJPU.bed.gz, line=145909]: chrom KI270728.1 not found [KI270728.1\t232284\t233183]\nAborting ... found error."}

Reference Source Details

Genome Assembly

GRCh38

File Format Specifications

1 item

Page

Description

Type

Download

Preview

10X Genomics Peaks Bedfile

file format specification

header_peak_set_scATAC_mEB_d21_mm39_20241120.tsv

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3641EGVH

MultiplexedSample

B cell, bone marrow

multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples