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IGVFFI1798XNPV

preview
pending
This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS7090INDM(prime editing Variant-EFFECTS targeting PPIF: variant effects)
Summary
variant effects
File Format
tsv
Content Type
variant effects
Aliases
jesse-engreitz:240908-S029-PPIF_5SpliceSitePool-THP1_Variant-EFFECTS_variant_effects_file
md5sum
3aeee5268285c50578e901e2f349b2fb
Submitted File Name
PPIF_5PrimeSplicePool_AllelicEffectsStats.tsv.gz

File Format Specifications

1 item
Page
Description
Type
Download
Preview
explanation of columns in analysis summary file output by the Variant-EFFECTS pipeline
file format specification

Samples

21 items
Sample Terms
Summary
InVitroSystem
THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 0-25% expression of PPIF) modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transfected with a guide library
InVitroSystem
THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 26-50% expression of PPIF) modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transfected with a guide library
InVitroSystem
THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 51-75% expression of PPIF) modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transfected with a guide library
InVitroSystem
THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 0-25% expression of PPIF) modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transfected with a guide library
InVitroSystem
THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 0-25% expression of PPIF) modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transfected with a guide library
InVitroSystem
THP-1 cell line, male, Homo sapiens modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transfected with a guide library
InVitroSystem
THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 26-50% expression of PPIF) modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transfected with a guide library
InVitroSystem
THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 51-75% expression of PPIF) modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transfected with a guide library
InVitroSystem
THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 26-50% expression of PPIF) modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transfected with a guide library
InVitroSystem
THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 26-50% expression of PPIF) modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transfected with a guide library

Files This File Derives From

304 items
fastq
reads
Jesse Engreitz, Stanford
20 MB
validated
fastq
reads
Jesse Engreitz, Stanford
4.5 MB
validated
fastq
reads
Jesse Engreitz, Stanford
5.1 MB
validated
fastq
reads
Jesse Engreitz, Stanford
6.3 MB
validated
fastq
reads
Jesse Engreitz, Stanford
11 MB
validated
fastq
reads
Jesse Engreitz, Stanford
2.2 MB
validated
fastq
reads
Jesse Engreitz, Stanford
17 MB
validated
fastq
reads
Jesse Engreitz, Stanford
10 MB
validated
fastq
reads
Jesse Engreitz, Stanford
4.4 MB
validated
fastq
reads
Jesse Engreitz, Stanford
4.5 MB
validated

Attribution

Award
HG011972
Principal Investigator(s)
Contact P.I.
Jesse Engreitz
Lab
Jesse Engreitz, Stanford