{
"@context": "/terms/",
"@id": "/tabular-files/IGVFFI1663LKVQ/",
"@type": [
"TabularFile",
"File",
"Item"
],
"accession": "IGVFFI1663LKVQ",
"aliases": [
"bill-majoros:bluestarr-k562-significant-predictions-file-v0.1.1"
],
"analysis_step_version": "/analysis-step-versions/f177d6b8-48b1-4d58-af7c-5c50da2b0e25/",
"assay_titles": [],
"assembly": "GRCh38",
"audit": {},
"award": {
"@id": "/awards/HG011967/",
"component": "predictive modeling"
},
"barcode_map_for": [],
"checkfiles_version": "v14",
"content_md5sum": "072626122721b726013634274699deb9",
"content_type": "variant effects",
"controlled_access": false,
"creation_timestamp": "2025-02-04T21:07:01.649772+00:00",
"derived_from": [
"/tabular-files/IGVFFI9643YRGK/"
],
"description": "Version of bluestarr-k562-prediction-file-v0.1.1 with only significant predictions ( |effect|>0.1 )",
"file_format": "bed",
"file_format_specifications": [
"/documents/a61b28ae-0d57-49e4-b56e-00acbad6330a/"
],
"file_format_type": "bed3+",
"file_set": {
"@id": "/prediction-sets/IGVFDS2340WJRV/",
"@type": [
"PredictionSet",
"FileSet",
"Item"
],
"accession": "IGVFDS2340WJRV",
"file_set_type": "functional effect",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM7883WOIS/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7883WOIS",
"classifications": [
"cell line"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002067/",
"status": "released",
"term_name": "K562"
}
],
"status": "released",
"summary": "virtual Homo sapiens (female) K562 cell line",
"taxa": "Homo sapiens"
}
],
"status": "released",
"summary": "functional effect prediction on scope of loci"
},
"file_size": 56666108,
"filtered": true,
"gene_list_for": [],
"href": "/tabular-files/IGVFFI1663LKVQ/@@download/IGVFFI1663LKVQ.bed.gz",
"input_file_for": [],
"integrated_in": [],
"lab": {
"@id": "/labs/bill-majoros/",
"title": "Bill Majoros, Duke"
},
"loci_list_for": [],
"md5sum": "d2f2f2092a5982180868fdafa805a73a",
"quality_metrics": [],
"release_timestamp": "2025-03-17T21:40:57.951928+00:00",
"s3_uri": "s3://igvf-files/2025/02/04/a3496564-ad15-4b22-81ad-4fca411acc4f/IGVFFI1663LKVQ.bed.gz",
"schema_version": "15",
"status": "released",
"submitted_by": {
"@id": "/users/a53b8173-d4ac-4f0b-b578-23156ca1f934/",
"title": "Brendan Kearney"
},
"submitted_file_name": "/data/reddylab/btk20/IGVF_submissions/sigpred.bed.gz",
"summary": "GRCh38 predictive filtered variant effects",
"upload_status": "validated",
"uuid": "a3496564-ad15-4b22-81ad-4fca411acc4f",
"workflow": {
"@id": "/workflows/IGVFWF3101OPAH/",
"name": "BlueSTARR workflow",
"uniform_pipeline": false
}
}