{
"@context": "/terms/",
"@id": "/tabular-files/IGVFFI1492BOLP/",
"@type": [
"TabularFile",
"File",
"Item"
],
"accession": "IGVFFI1492BOLP",
"analysis_step_version": "/analysis-step-versions/c3ad4525-87d0-4d22-9410-f3e616d7cb9c/",
"assay_titles": [
"lentiMPRA"
],
"assembly": "GRCh38",
"audit": {},
"award": {
"@id": "/awards/HG011966/",
"component": "functional characterization"
},
"barcode_map_for": [],
"checkfiles_version": "v14",
"content_md5sum": "ae48c952e11d06225d6caf15fa1e712b",
"content_type": "reporter experiment barcode",
"controlled_access": false,
"creation_timestamp": "2025-01-28T15:44:35.892437+00:00",
"derived_from": [
"/tabular-files/IGVFFI6803EINC/",
"/sequence-files/IGVFFI0134GNSM/",
"/sequence-files/IGVFFI4931RFSB/",
"/sequence-files/IGVFFI0535AWPM/",
"/sequence-files/IGVFFI5166MAAE/",
"/sequence-files/IGVFFI5993IFJO/",
"/sequence-files/IGVFFI5266KWUB/",
"/sequence-files/IGVFFI9417TRDK/",
"/sequence-files/IGVFFI4004PHAQ/",
"/sequence-files/IGVFFI2499MLDS/",
"/sequence-files/IGVFFI8659VHIL/",
"/sequence-files/IGVFFI5359VGAX/",
"/sequence-files/IGVFFI2757GDIC/",
"/sequence-files/IGVFFI4074NIFA/",
"/sequence-files/IGVFFI9789RBOG/",
"/sequence-files/IGVFFI0747QDLW/",
"/sequence-files/IGVFFI6026PNQO/",
"/sequence-files/IGVFFI5426GNTO/",
"/sequence-files/IGVFFI1160ULRW/",
"/sequence-files/IGVFFI6533LHQS/",
"/sequence-files/IGVFFI1842QKTA/",
"/sequence-files/IGVFFI2027ZISR/",
"/sequence-files/IGVFFI8521YYSV/",
"/sequence-files/IGVFFI2748NZJM/",
"/sequence-files/IGVFFI0949NJRN/",
"/sequence-files/IGVFFI3267AQGF/",
"/sequence-files/IGVFFI2534IXWS/",
"/sequence-files/IGVFFI0944FKHE/",
"/sequence-files/IGVFFI8723OKOI/",
"/sequence-files/IGVFFI6582NYXF/",
"/sequence-files/IGVFFI7125POHK/",
"/sequence-files/IGVFFI5041KLXZ/",
"/sequence-files/IGVFFI8371STUX/",
"/sequence-files/IGVFFI3111PIZV/",
"/sequence-files/IGVFFI5564OOVA/",
"/sequence-files/IGVFFI1670MEFP/",
"/sequence-files/IGVFFI0480AEXF/",
"/sequence-files/IGVFFI7625UHVM/",
"/sequence-files/IGVFFI9636CVWT/",
"/sequence-files/IGVFFI6150BVVR/",
"/sequence-files/IGVFFI5706ISAV/",
"/sequence-files/IGVFFI6548NEJG/",
"/sequence-files/IGVFFI5093RTXQ/",
"/sequence-files/IGVFFI7696HGKL/",
"/sequence-files/IGVFFI0880DPOQ/",
"/sequence-files/IGVFFI2983CGMA/",
"/sequence-files/IGVFFI9629WYWP/",
"/sequence-files/IGVFFI5357LHEG/",
"/sequence-files/IGVFFI3537XINM/",
"/sequence-files/IGVFFI3584MRJO/",
"/sequence-files/IGVFFI6977PLLB/",
"/sequence-files/IGVFFI5082OJBI/",
"/sequence-files/IGVFFI0130HTTZ/",
"/sequence-files/IGVFFI5020DCDM/",
"/sequence-files/IGVFFI1164KXKU/"
],
"description": "HepG2 reporter barcode experiment results",
"file_format": "tsv",
"file_format_specifications": [
"/documents/efc0f977-860e-4a9e-a71f-84d2c6a666cc/"
],
"file_set": {
"@id": "/analysis-sets/IGVFDS3278AFYF/",
"@type": [
"AnalysisSet",
"FileSet",
"Item"
],
"accession": "IGVFDS3278AFYF",
"file_set_type": "principal analysis",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM9009DVDG/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9009DVDG",
"classifications": [
"cell line",
"pooled cell specimen"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001187/",
"status": "released",
"term_name": "HepG2"
}
],
"status": "released",
"summary": "Homo sapiens (male) HepG2 pooled cell specimen transduced (lentivirus) with a reporter library",
"taxa": "Homo sapiens"
}
],
"status": "released",
"summary": "lentiMPRA: reporter experiment, reporter experiment barcode"
},
"file_size": 246383684,
"gene_list_for": [],
"href": "/tabular-files/IGVFFI1492BOLP/@@download/IGVFFI1492BOLP.tsv.gz",
"input_file_for": [],
"integrated_in": [],
"lab": {
"@id": "/labs/nadav-ahituv/",
"title": "Nadav Ahituv, UCSF"
},
"loci_list_for": [],
"md5sum": "cb280cf1d052812e5722ae8b71358957",
"quality_metrics": [
"/mpra-quality-metrics/3ed03a67-e931-484f-bba8-a9b9c6369a22/"
],
"release_timestamp": "2025-01-30T17:47:27.846170+00:00",
"s3_uri": "s3://igvf-files/2025/01/28/acb0bca5-c34e-4ee6-a6ff-bab90ac69287/IGVFFI1492BOLP.tsv.gz",
"schema_version": "15",
"status": "released",
"submitted_by": {
"@id": "/users/3ad3479d-753b-4293-9c09-c0dcabfd0ddb/",
"title": "Max Schubach"
},
"submitted_file_name": "\"/data/cephfs-2/unmirrored/groups/kircher/IGVF_data_submssion_TM/proximalPromotor/mprasnakeflow/results/experiment/HepG2/reporter_experiment.barcode.HepG2.defaultAssignment.default.all.tsv.gz\"",
"submitter_comment": "MPRAsnakeflow v0.3.0",
"summary": "GRCh38 reporter experiment barcode",
"upload_status": "validated",
"uuid": "acb0bca5-c34e-4ee6-a6ff-bab90ac69287",
"workflow": {
"@id": "/workflows/IGVFWF6032PEGT/",
"name": "MPRAsnakeflow",
"uniform_pipeline": true
}
}