IGVFFI1443DGBS

released

validation exempted

File Set

IGVFDS6039JXBR(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)

Summary

GRCh38 peaks

Analysis Step Version

/analysis-step-versions/699d6738-4033-4afc-b6f3-1d82a80e0b41/

File Format

bed

Content Type

peaks

Aliases

ansuman-satpathy:igvf15_peaks_10x1

md5sum

596525f87759383c34a1d1e1ed281782

Content MD5sum

5b5cdc67d8851bcc727f0f3b021ea184

File Size

2.7 MB

Submitted File Name

/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf15/e15l1_peaks.bed

Checkfiles Version

v14

Validation Error Detail

{"md5sum": "original md5sum 5b5cdc67d8851bcc727f0f3b021ea184 does not match newly calculated md5sum 596525f87759383c34a1d1e1ed281782.", "validate_files": "Error [file=/home/ubuntu/igvf-files/2025/01/28/bd110c77-ed82-47af-a759-41b9eddee23c/IGVFFI1443DGBS.bed.gz, line=328915]: chrom KI270728.1 not found [KI270728.1\t232288\t233185]\nAborting ... found error."}

Reference Source Details

Genome Assembly

GRCh38

File Format Specifications

1 item

Page

Description

Type

Download

Preview

10X Genomics Peaks Bedfile

file format specification

header_peak_set_scATAC_mEB_d21_mm39_20241120.tsv

Samples

3 items

Sample Terms

Disease Terms

Summary

IGVFSM0825LHRL

MultiplexedSample

GM25256 (WTC-11)

multiplexed sample: GM25256 (WTC-11) differentiated cell specimen induced to liver for 18 days, male, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to liver for 13 days, male, Homo sapiens; ... and 10 more samples

MultiplexedSample

MultiplexedSample