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IGVFFI1443DGBS

released
validation exempted
File Set
IGVFDS6039JXBR(single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq): cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)
Summary
GRCh38 peaks
Analysis Step Version
/analysis-step-versions/699d6738-4033-4afc-b6f3-1d82a80e0b41/
File Format
bed
Content Type
peaks
Aliases
ansuman-satpathy:igvf15_peaks_10x1
md5sum
596525f87759383c34a1d1e1ed281782
Content MD5sum
5b5cdc67d8851bcc727f0f3b021ea184
File Size
2.7 MB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf15/e15l1_peaks.bed
Checkfiles Version
v14
Validation Error Detail
{"md5sum": "original md5sum 5b5cdc67d8851bcc727f0f3b021ea184 does not match newly calculated md5sum 596525f87759383c34a1d1e1ed281782.", "validate_files": "Error [file=/home/ubuntu/igvf-files/2025/01/28/bd110c77-ed82-47af-a759-41b9eddee23c/IGVFFI1443DGBS.bed.gz, line=328915]: chrom KI270728.1 not found [KI270728.1\t232288\t233185]\nAborting ... found error."}
Attribution
Ansuman Satpathy, Stanford

Reference Source Details

Genome Assembly
GRCh38

File Format Specifications

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to liver for 18 days; Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to liver for 13 days; ... and 10 more samples

Files This File Derives From

1 item
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
tsv
fragments
Ansuman Satpathy, Stanford
4.7 GB
validation exempted