IGVFFI1346BGPN

released
validation exempted
File Set
IGVFDS4963SRAJ(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)
Summary
fragments
Analysis Step Version
File Format
tsv
Content Type
fragments
Aliases
ansuman-satpathy:igvf18_fragments_10x3
md5sum
5c6c99fd8dd3c5f2faf5e54f5a042dfa
Content MD5sum
8b5916242f21ce520ae34dbfa93f91a9
File Size
5.0 GB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf18/e18l3_fragments.tsv.gz
Checkfiles Version
Validation Error Detail
{"tabular_file_error": {"schema": null, "error_number_limit": 1000, "number_of_errors": 1000, "extra-cell": {"count": 1000, "description": "This row has more values compared to the header row (the first row in the data source). A key concept is that all the rows in tabular data must have the same number of columns.", "details": [{"row_number": 52, "field_number": 2, "note": ""}, {"row_number": 52, "field_number": 3, "note": ""}]}, "error_types": ["extra-cell"]}}

File Format Specifications

Samples

4 items
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: IMR-90 cell line, female, Homo sapiens; MCF-7 cell line, female, Homo sapiens; ... and 17 more samples
MultiplexedSample
multiplexed sample: IMR-90 cell line, female, Homo sapiens; MCF-7 cell line, female, Homo sapiens; ... and 17 more samples
MultiplexedSample
multiplexed sample: IMR-90 cell line, female, Homo sapiens; MCF-7 cell line, female, Homo sapiens; ... and 17 more samples
MultiplexedSample
multiplexed sample: IMR-90 cell line, female, Homo sapiens; MCF-7 cell line, female, Homo sapiens; ... and 17 more samples

Files This File Derives From

4 items
fastq
reads
Ansuman Satpathy, Stanford
5.8 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
14 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
24 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
24 GB
validated

Files Derived From This File

2 items
bed
peaks
GRCh38 peaks
Ansuman Satpathy, Stanford
1.7 MB
validation exempted
tbi
index
index of IGVFFI1346BGPN
Ansuman Satpathy, Stanford
1.7 MB
validated

Attribution