{
"@context": "/terms/",
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"TabularFile",
"File",
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],
"accession": "IGVFFI1231XMQS",
"aliases": [
"jesse-engreitz:auxiliary_sortparams_file_CRUDO_SSFA2-Auxin0hrs-FF1"
],
"assay_titles": [
"CRISPR FlowFISH screen"
],
"audit": {
"NOT_COMPLIANT": [
{
"category": "missing file format specifications",
"detail": "Tabular file [IGVFFI1231XMQS](/tabular-files/IGVFFI1231XMQS/) has no `file_format_specifications`. Tabular files are expected to link to a file format specifications document describing the headers of the file.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_tabular_file_no_file_format_specifications",
"path": "/tabular-files/IGVFFI1231XMQS/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization"
},
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"content_md5sum": "a2a1455e7ab01eab5faa406888b4150a",
"content_type": "sample sort parameters",
"controlled_access": false,
"creation_timestamp": "2024-07-03T00:36:01.266979+00:00",
"file_format": "tsv",
"file_set": {
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"accession": "IGVFDS1546MEZJ",
"file_set_type": "cell sorting",
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{
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"accession": "IGVFSM7231THBU",
"classifications": [
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],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002824/",
"term_name": "HCT116"
}
],
"summary": "HCT116 cell line, male, Homo sapiens (sorting details: FACS bin A for 0-10% expression of SSFA2) modified with a guide library",
"taxa": "Homo sapiens"
},
{
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"classifications": [
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],
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"term_name": "HCT116"
}
],
"summary": "HCT116 cell line, male, Homo sapiens (sorting details: FACS bin B for 10-20% expression of SSFA2) modified with a guide library",
"taxa": "Homo sapiens"
},
{
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],
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"term_name": "HCT116"
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],
"summary": "HCT116 cell line, male, Homo sapiens (sorting details: FACS bin C for 35-45% expression of SSFA2) modified with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM5613UEVU/",
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],
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}
],
"summary": "HCT116 cell line, male, Homo sapiens (sorting details: FACS bin D for 55-65% expression of SSFA2) modified with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM7435FSSP/",
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],
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"term_name": "HCT116"
}
],
"summary": "HCT116 cell line, male, Homo sapiens (sorting details: FACS bin E for 80-90% expression of SSFA2) modified with a guide library",
"taxa": "Homo sapiens"
},
{
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"term_name": "HCT116"
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],
"summary": "HCT116 cell line, male, Homo sapiens (sorting details: FACS bin F for 80-100% expression of SSFA2) modified with a guide library",
"taxa": "Homo sapiens"
}
],
"summary": "cell sorting for CRISPR interference FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci, CRISPR interference FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci, ... and 4 more measurement sets"
},
"file_size": 457,
"gene_list_for": [],
"href": "/tabular-files/IGVFFI1231XMQS/@@download/IGVFFI1231XMQS.tsv.gz",
"input_file_for": [],
"integrated_in": [],
"lab": {
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"title": "Jesse Engreitz, Stanford"
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"md5sum": "90bb8945eaba9089eb81e6efe2a225df",
"release_timestamp": "2024-07-10T20:29:46.298243+00:00",
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"schema_version": "11",
"status": "released",
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"title": "Benjamin Doughty"
},
"submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/240410_IGVF_upload/sortparams/220307B014_2.ssfa2.tsv.gz",
"summary": "sample sort parameters",
"upload_status": "validated",
"uuid": "03cc88ea-4b48-46fc-9cd7-3b49712409ce"
}