IGVFFI1218AHFU

released
validated
{
    "@context": "/terms/",
    "@id": "/tabular-files/IGVFFI1218AHFU/",
    "@type": [
        "TabularFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI1218AHFU",
    "aliases": [
        "ansuman-satpathy:igvf12_multiseq_count_matrix_10x7"
    ],
    "analysis_step_version": "/analysis-step-versions/49020a48-9224-4d9c-8d55-2264aaf17a1f/",
    "assay_titles": [
        "10x multiome with MULTI-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG011972/",
        "component": "functional characterization"
    },
    "barcode_map_for": [],
    "checkfiles_version": "v16",
    "content_md5sum": "af813a89ea3ddf2a955602b598625f5a",
    "content_type": "cell hashing barcodes",
    "controlled_access": false,
    "creation_timestamp": "2025-02-19T23:35:05.709326+00:00",
    "derived_from": [
        "/sequence-files/IGVFFI0771ZJDT/",
        "/sequence-files/IGVFFI4571APLX/",
        "/sequence-files/IGVFFI0626CVGB/",
        "/sequence-files/IGVFFI4073WFIQ/",
        "/sequence-files/IGVFFI1692GFZI/",
        "/sequence-files/IGVFFI6200YIML/",
        "/sequence-files/IGVFFI4833XHON/",
        "/sequence-files/IGVFFI7552AXZY/",
        "/sequence-files/IGVFFI1719NTNR/",
        "/sequence-files/IGVFFI7140FMNV/",
        "/sequence-files/IGVFFI8206LJFI/",
        "/sequence-files/IGVFFI5850CICM/",
        "/sequence-files/IGVFFI9144JRAH/",
        "/sequence-files/IGVFFI0268QUBM/",
        "/sequence-files/IGVFFI1709KJOZ/",
        "/sequence-files/IGVFFI5921OQNR/",
        "/sequence-files/IGVFFI6771QSGT/",
        "/sequence-files/IGVFFI4377XQPW/",
        "/sequence-files/IGVFFI0837ERPB/",
        "/sequence-files/IGVFFI6293VQNL/",
        "/sequence-files/IGVFFI9004SQZS/",
        "/sequence-files/IGVFFI7206WSXB/",
        "/sequence-files/IGVFFI4512BMKT/",
        "/sequence-files/IGVFFI5553XTUG/",
        "/sequence-files/IGVFFI5156TMOD/",
        "/sequence-files/IGVFFI5697EQZC/",
        "/sequence-files/IGVFFI4061UCIM/",
        "/sequence-files/IGVFFI7409YJVY/"
    ],
    "file_format": "tsv",
    "file_format_specifications": [
        "/documents/5bcaecf9-d8dd-4126-bcc8-696cf6d530d3/"
    ],
    "file_set": {
        "@id": "/analysis-sets/IGVFDS5437FJHN/",
        "@type": [
            "AnalysisSet",
            "FileSet",
            "Item"
        ],
        "accession": "IGVFDS5437FJHN",
        "file_set_type": "intermediate analysis",
        "samples": [
            {
                "@id": "/multiplexed-samples/IGVFSM6125HAMH/",
                "@type": [
                    "MultiplexedSample",
                    "Sample",
                    "Item"
                ],
                "accession": "IGVFSM6125HAMH",
                "classifications": [
                    "differentiated cell specimen",
                    "tissue",
                    "multiplexed sample"
                ],
                "disease_terms": [],
                "modifications": [],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/CL_0000236/",
                        "status": "released",
                        "term_name": "B cell"
                    },
                    {
                        "@id": "/sample-terms/UBERON_0002371/",
                        "status": "released",
                        "term_name": "bone marrow"
                    }
                ],
                "status": "released",
                "summary": "multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples",
                "taxa": "Homo sapiens",
                "treatments": []
            }
        ],
        "status": "released",
        "summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
    },
    "file_size": 189390,
    "gene_list_for": [],
    "href": "/tabular-files/IGVFFI1218AHFU/@@download/IGVFFI1218AHFU.tsv.gz",
    "input_file_for": [],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/ansuman-satpathy/",
        "title": "Ansuman Satpathy, Stanford"
    },
    "loci_list_for": [],
    "md5sum": "1c3e1a872c923e55dff41fcdc3f1c1a3",
    "quality_metrics": [],
    "release_timestamp": "2025-03-22T00:43:52.875907+00:00",
    "s3_uri": "s3://igvf-files/2025/02/19/36c4af90-9bbf-4ed9-a5d0-50e6c55d0748/IGVFFI1218AHFU.tsv.gz",
    "schema_version": "15",
    "status": "released",
    "submitted_by": {
        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
        "title": "Christopher Mcginnis"
    },
    "submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/multi_tsvs/e12l7_tag_mtx.tsv.gz",
    "summary": "cell hashing barcodes",
    "upload_status": "validated",
    "uuid": "36c4af90-9bbf-4ed9-a5d0-50e6c55d0748",
    "workflow": {
        "@id": "/workflows/IGVFWF1453HVEC/",
        "name": "Satpathy Cell Ranger",
        "uniform_pipeline": false
    }
}